Sinorhizobium medicae: Smed_1399
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Entry
Smed_1399 CDS
T00555
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Smed_1399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_1399
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smed_1399
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Smed_1399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABR60245
UniProt:
A6U9B5
LinkDB
All DBs
Position
complement(1475152..1478667)
Genome browser
AA seq
1171 aa
AA seq
DB search
MTMIPGLDPRKVLAATREMTIGPVPTGAEALVLAELARGGAPVAYILSDGQKVSDLEQVL
GFVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTVNAVL
QRISPQDVIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVP
GSGEPLRLDFFGDTLEAIRAFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSL
FGAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLNGFRIVTDHLAREAAAERS
KLILDYYDARLASASPGKSQATQGTPYKPVPPDMLYLAAKAFGDALTERNAVRLSPFSEH
EGEARHVVHIEARQGVRWAKSASEAESDGTRTNVFDQAVKHIAEKRAKGARVLVSGWTEG
SLDRLLQVLGEHGLANIRPVQALSDLNSLRPGEAASTVLSLEAGFESGDLVVIGEQDILG
DRLVRRSKRRKRGSDFIAEVTGLDEGSYVVHAEHGIGRFVGLQTIEAAGAPHDCLELVYA
DDAKLFLPVENIELLSRYGSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAER
HTRHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGSGRPMDRLVCGDVGFGKT
EVALRAAFIAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRIQQASRLVGSKELALT
KKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYV
CPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGL
DVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFSLFTLPVNKTLTGPAERRLKVLQS
LDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIRDT
GWSPQISVGTPVMIPEDYVPDLNLRLALYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQ
HLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNAAALVGYIAKQGTIAKIRPDQS
IFFQRDLATPEKRLSGAAMVMTQLAALAKAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgatacctggcctcgaccctaggaaggttcttgcggcgacgcgggaaatgaca
atcggcccggtgccaacgggtgccgaggcgctcgtacttgcggagctggcgcgtggcggc
gcacccgtcgcctatattctgtctgacggacagaaggtctcagacctcgaacaggtgctc
ggcttcgtcgctcccgacatcccggttctgacgctgcccggttgggactgtcttccctac
gaccgcgtctccccgagcgccgatacgtcggcccggcgcctggcggccctgagcgcgctg
attgcccatcgacggaaaccgcatccggcgatcgtgctcgtcaccgtcaatgcggtcctg
caaaggatctcgccgcaggatgtgatcgaaagcctcgccttcactgctcgtcccggcaat
cagatccgcatggacgaccttgcggcccggctcgagcgaaacggtttcgagcgggtgccg
acggtgcgcgagatgggcgaatttgccgtgcgaggaggcatcctcgacgtctatgtaccc
ggcagcggcgagcctctgcgccttgacttcttcggcgacacgctcgaggcgatccgcgca
ttcgacccggcaagccagcgcacgatcgggcaggttcgatccctggacctcaatccgatg
agcgaggtgtcgctgacgccggaaacgataagccacttccgaaagcagtatctttcgctc
ttcggagcggcgacgcgcgatgatgcgctctatcaggcggtgtcggagggccggcgttat
gcgggcatggagcattggctgcccctcttttatgatcggctcgaaaccgtcttcgactat
ctgaacggttttcgcatcgtcaccgatcatctggcgcgagaggccgccgcggagcgctcg
aagctcattctcgactattacgacgcgcgtcttgcctccgcttcaccgggcaagtcccag
gccacgcagggcacgccttacaagccagtgccgccggacatgctctatctcgccgcgaaa
gcgttcggggatgcgctgacggagcgcaatgccgtccgcctgtcacctttctccgaacac
gagggcgaagcccgacacgttgtgcatatcgaagcgcgccagggtgtgcgttgggccaag
tccgcgagcgaggccgaaagtgacggcacgcgcaccaacgtcttcgatcaggcagtgaag
catatcgccgaaaagcgcgccaaaggcgccagggtcctcgtatccggttggacggaaggt
tcgctcgaccggctgcttcaggttctaggcgagcatggcctggccaatatccgcccggtc
caggcgctttcggacctcaattcgctgaggccgggtgaagcggcatccaccgttcttagc
ctcgaagcgggttttgaaagcggcgaccttgtcgtcataggcgagcaggacattctcgga
gaccgtctggttcgccgctccaagcgccgcaagcggggctctgatttcattgccgaagtg
accggcctggatgagggcagctacgtcgttcacgccgagcacgggatcgggcgctttgtc
ggcctgcagacaatcgaagccgccggtgcgccgcatgactgcctcgaactcgtctatgcg
gacgacgccaagctctttttgccggtggaaaacatcgagcttctgtcccgctacggttcg
gaaggaaccgacgcggttctggacaagcttggcggggtcgcctggcaggcgcgcaaggcc
aagctcaagaagcgcctgctggacatggccggggggctcattcgcattgcggccgaaaga
cacacgcgccatgcgccggtcctggcggcgcaggatggcgtctacgacgaattcgcagca
cgcttcccctatgacgagaccgaggaccagctgaactcgatcgatgccgttcgcgacgat
ctcggcagcggcaggccgatggatcgcctcgtatgcggagatgtcggcttcgggaagacg
gaggtggcgctgcgtgccgctttcatcgcggcgatgaacggcgtgcaggtggctgtggtc
gtacccacgacactgcttgcgcggcagcacttcaggaccttctccgaacgtttccgcggt
ctgccgatacggattcagcaagcctcccggctcgtcggctcgaaggagctggcgctcacc
aagaaggaagttgcggaaggcaagacggacatcgtggtcggcacgcatgcattgctcggc
tcgtcgatcaaattcgccaatctcggcctgctgatcatcgacgaggagcagcacttcggc
gtgaagcacaaggaacgcctgaaagagctgaagaccgatgtgcatgttctcacgctctcg
gcgacgcccattccgcggacactgcagcttgcccttaccggcgtgcgtgaattgtcgctg
atcaccacgccgcccgtcgatcgcatggcggtgcggaccttcatttcgcccttcgacgcg
ctggtgatccgagagacgctgatgcgtgagcactatcgcgggggccagagcttctatgtc
tgtccacgtgtaagcgatcttccggagattcacgatttcctgaagtccgacgtgccggaa
ctgaaggtggccgtggcgcatgggcaaatgccagcaaccgaactcgaagacatcatgaac
gccttctacgaaggtcgctacgatgtcctgctctcgaccacgatcgtcgagtccggtctc
gacgtaccgaccgccaataccctgatcgtgcatcgtgcggacatgttcggtctggcccag
ctctatcagctgcgcggccgcgtagggcgctccaaggtccgcgccttctcgctctttacg
cttccggtaaacaagaccctgaccggacctgcggagcggcgcctcaaggtcctgcagtcg
cttgatacgctcggagccgggttccagctcgccagccacgatctcgatatccgcggcgcc
ggcaacctgctgggcgaggaacagtcgggtcatatcaaggaggtcggttttgagctctac
cagcagatgctggaggaagcggtggccgaactcaagggcgaggaggagatccgcgatacc
ggctggtcgccgcagatatcggtcggcacaccggtgatgatccccgaagactatgtgccc
gacctcaacctgcggctcgcgctctatcggcgtctgggcgagctgacggatctcaaggag
atcgacggcttcggtgcggaactgatcgaccgtttcgggccgcttccaacggaggtgcag
cacctcctcaagatcgtctacgtcaagtcgctctgccgcaccgcgaatgtcgaaaaactc
gatgccgggcctaagggcgtcgtggtgcagttccgcaacaaggagttccccaacgcggcc
gctctcgtcggttacatcgccaagcaggggacgatcgccaaaatccgcccggaccagagc
atcttcttccagcgcgatcttgccacaccggaaaaacggctctccggtgccgcaatggtc
atgacgcagctcgcagcgctcgcaaaagccgcatag
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integrated database retrieval system
