Sinorhizobium medicae: Smed_5901
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Entry
Smed_5901 CDS
T00555
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03420
Nucleotide excision repair
smd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Smed_5901
03430 Mismatch repair
Smed_5901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_5901
Enzymes [BR:
smd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Smed_5901
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Smed_5901
MMR (mismatch excision repair)
Other MMR factors
Smed_5901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
AAA_30
HHH_5
HHH
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
ABR64595
UniProt:
A6ULR5
LinkDB
All DBs
Position
pSMED02:865787..867856
Genome browser
AA seq
689 aa
AA seq
DB search
MNPAYLEKLNDRQREAVEHGIGRPSSEIGGPLLIIAGAGSGKTNTLAHRVAHLIVNGADP
RRILLMTFSRRAAYEMTRRVKSICRQVLGNQAAAIGDALTWAGTFHGIGARLLRIYAEQI
GVNVDFTIHDREDAADLMNLIRHELGFSRTESRFPTKNTCLAIYSRVVNSESSISEVLKS
SYPWVSAWEEQLKQLFAGYVESKQAQNVLDYDDLLLYWAQMVSDPGLAEDVGTRFDHILV
DEYQDTNRLQSSILLSLKPAGRGLTVVGDDAQSIYSFRAATIRNILDFPKAFSPAPADVI
TLERNYRSTQPILAAANGVIDLARERFTKNLWTDRQSEQRPRLVSVKDEADQANYIVEQV
LGNRDLGVPLKQQAVLFRSSNHSGALEVELTRRNIPFVKFGGLKFLDAAHVKDLLAVLRF
AQNPRDRVAGFRLLQMLPGVGPQTAGKILDTIAADPEPLFSLTEIPSPPKTGDHWTEFVT
LLSTLRKAGVGWPEEIASARAWYEPHLDRIHEDAGTRKADLLQLEQIASGYPNRERFLTE
LTLDPPDATSDQAGVPLLDEDYLVLSTIHSAKGQEWRSVFMLNVVDGCIPSDLAAGTTAE
LEEERRLLYVGMTRARDSLDLLTPQRFFTGGQNALGDRHVYASRTRFIPATLLQFFETTS
WPKVTANAGDRSARQIRVDVGARMRSMWK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctgcctatctggaaaagctcaatgaccgccagagggaggcggtggaacatggg
atcggtcgcccaagcagtgaaatcggtgggccgctgctcatcatcgcaggcgcaggttca
ggaaaaaccaatacgctcgcccatcgcgtcgcccacctgatcgtcaacggcgcagatcca
cgccgtatcctgctcatgaccttttcccgccgcgccgcttacgaaatgacccgtcgcgta
aaaagcatctgtcggcaggtgcttgggaaccaagccgccgccatcggcgacgccttgacc
tgggccgggaccttccacgggatcggcgcgaggctccttcgcatctatgccgagcagata
ggcgtaaacgtggatttcaccattcacgaccgggaagatgccgcagacctgatgaatctc
atacgccacgaactcggcttttcacggaccgaaagccgctttccgacaaagaacacctgc
cttgccatctattcgcgcgtggtcaattccgagagctcgatctccgaggttctcaagtcc
tcctatccctgggtatcggcgtgggaggagcagctgaagcagctcttcgcgggctatgtg
gaatccaagcaggcgcagaacgttctcgactatgacgatctcctgctctactgggcgcaa
atggtgtccgatccgggactcgccgaggatgtcggcacgcgcttcgaccatatcctggtc
gacgagtatcaggacacgaaccgccttcagtcctcgattctgctgtccctcaagcccgcc
ggccgggggctcacggtggtcggcgacgatgcgcagtcgatttattctttccgggcggcg
acgatccgcaacattctcgactttccgaaagcgttttctccggcgcccgctgacgtgatc
acactcgagcgcaattaccgctcgacgcagccgatcctcgcggctgccaacggcgtcatc
gacctcgcccgcgagcgtttcaccaagaacctctggacggacaggcagtcggaacagcgg
ccgcggctcgtttcggtcaaggatgaggccgatcaggccaactacatcgtggagcaggtt
ctgggaaaccgcgaccttggcgttccgctgaagcaacaggcggtactgttccggtcatcg
aaccacagcggagccttggaagtggaattgacacgccgcaacattcccttcgtgaaattc
ggcggtctgaagtttctcgatgccgctcacgtgaaggatctgctggccgttctccgtttt
gcgcagaacccacgcgaccgcgtcgccggcttccgccttctccagatgcttccgggagtt
ggccctcagacggccggaaagatcctcgacacaatagccgccgatcccgaaccgctcttt
tcgctcaccgaaattccatctccgccgaaaactggggatcattggaccgagttcgtaact
ctgctgtcgaccttgagaaaagccggcgtcggatggcccgaagaaatcgcttccgcccgg
gcctggtacgaaccgcacctcgaccgcatccatgaggatgccggaacgcgcaaagcggat
ctgctgcagctggagcagatcgcctccggctatcccaatcgcgagcgattccttacggaa
cttacgttggatccgccggacgccaccagcgaccaggccggcgtaccgcttctcgacgaa
gactatctggtcctatcaaccatccattctgccaagggccaggagtggcgctccgtcttc
atgctgaacgtggtggacgggtgcattccttccgacctcgcggccggcacgacggccgag
ctcgaagaagagcgccgcttgctttacgtcggcatgacgcgggcgcgggacagtctggac
cttctgacgccgcagagatttttcacggggggacaaaatgcactgggtgaccgtcacgtc
tacgcttcgcggacccggttcatcccagccacgctccttcagtttttcgaaacgacgagc
tggccgaaggtcaccgcgaatgccggcgaccgaagtgcccgacaaatccgagtggatgtc
ggagcccggatgcggtcgatgtggaagtga
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