KEGG   Silurus meridionalis (southern catfish): 124379084
Entry
124379084         CDS       T08004                                 
Name
(RefSeq) polyubiquitin-B isoform X1
  KO
K08770  ubiquitin C
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03320  PPAR signaling pathway
smeo04120  Ubiquitin mediated proteolysis
smeo04137  Mitophagy - animal
smeo04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124379084
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    124379084
   04137 Mitophagy - animal
    124379084
 09150 Organismal Systems
  09152 Endocrine system
   03320 PPAR signaling pathway
    124379084
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smeo04121]
    124379084
Ubiquitin system [BR:smeo04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   124379084
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 DUF2604 Rad60-SLD_2 Ubiquitin_5 TBK1_ULD OTU1_UBXL
Other DBs
NCBI-GeneID: 124379084
NCBI-ProteinID: XP_046695127
LinkDB
Position
25:complement(5875224..5890254)
AA seq 603 aa
MLVKMMTGKKITLEVELSDTVENVKAKIQNNDRIPSDQQGLISFGKQLEDGRTLSNYNIQ
KESTLHLVLRLRCSMLIFVKTLTGKSITLEVKPSDTVENVKAKIQDKEGIPPDPQRLIFA
GKQLKDSCTLSNYNIQKESTLHLVLRLMGGKQIFVKTLTGKTITLEVEPSDSIENVKAKI
HDKEGIPSDQQRLIFAGKQLEDDRTLNEYNIQKESTLHLILRLRGGMQIFVKTLTGKTIT
LEVEPSDTIENVKAKIQDKEGILSDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLR
GGMQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
YNIQKESSLHLVLRLRGGMQIFVKTLTGKTITLEVELSDTIENVKAKIQDKEGILSDQQR
LIFAGKQLEDDRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV
KVKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESSLHLVLRLRGGMQIFVKKMTG
KTITLKVETSDTVENVKAKIQEKEGIPSDQQKLIFTGKRLEDGHTLSDYNIQKESTLYLV
LRF
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgcttgtgaagatgatgactggcaagaaaatcacccttgaggttgagctaagtgacaca
gttgagaacgtcaaggccaaaatccagaacaatgatcgcattccctcagatcagcagggg
ttgatctcctttggcaagcagctggaagatggtcgcaccctgtccaactacaacatccag
aaggagtccacgctccacctggtgctgcgtctcaggtgcagcatgctgatctttgtgaaa
accttgactggtaagagcatcacccttgaggttaagccaagtgacacagttgagaacgtc
aaggccaaaatccaggacaaagaaggcattcctccagatcctcagaggttgatcttcgct
ggcaagcagctgaaagatagttgcaccctgtccaactacaacatccagaaggagtccacg
ctccacctggtgctgcgtctcatgggcggcaagcagatctttgtaaaaaccttgactggt
aagaccatcacccttgaggttgagccaagtgactccattgagaatgtcaaggccaaaatc
cacgacaaggaaggcattccctcagatcagcagaggttgatcttcgctggcaagcagctg
gaagatgaccgcaccctaaacgaatacaacatccagaaggagtccaccctccatctgatc
ctgcgtctcaggggtggtatgcagatctttgtcaagaccttgactggtaagaccatcacc
cttgaggttgagccaagtgacacaattgagaatgtcaaggccaaaatccaggacaaggaa
ggcattctctcagatcagcagaggttgatcttcgctggcaagcagctggaagatgaccgc
accctgtccgactacaacatccagaaggagtccaccctccatctggtcctgcgtctcagg
ggtggtatgcagatctttgtcaagaccttgactggcaagactatcacccttgaggttgag
ccaagtgacacaattgagaatgtcaaggtcaaaatccaggacaaggaaggcattccccca
gatcagcagaggttgatctttgctggcaagcagctggaagatggccgcaccctgtccgac
tacaacatccagaaggagtccagcctccacttagtgctgcgtctcaggggtggtatgcag
atctttgtgaagaccttgaccggcaagaccatcacccttgaggttgagctaagtgacacc
attgagaatgtcaaggccaaaatccaggacaaggaaggcattctctcagatcagcagagg
ttgatcttcgctggcaagcagctggaagatgaccgcaccctgtccgactacaacatccag
aaggagtccaccctccatctggtcctgcgtctcaggggtggtatgcagatctttgtcaag
accttgactggcaagactatcacccttgaggttgagccaagtgacacaattgagaatgtc
aaggtcaaaatccaggacaaggaaggcattcccccagatcagcagaggttgatctttgct
ggcaagcagctggaagatggccgcaccctgtccgactacaacatccagaaggagtccagc
ctccacttagtgctgcgtctcaggggtggtatgcagatctttgtgaagaagatgactggc
aagaccatcactcttaaggttgagacaagtgacaccgttgagaacgttaaggccaaaatc
caggaaaaggaaggcattccatcagatcagcagaagttgatcttcactggaaagcggctg
gaagatggtcacaccttgtctgactacaacatccagaaggagtccaccctctacctggtg
ctgcgtttttaa

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