Silurus meridionalis (southern catfish): 124380631
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Entry
124380631 CDS
T08004
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124380631 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124380631 (ttc37)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
124380631 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_1
TPR_14
TPR_17
TPR_16
TPR_11
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_9
ANAPC3
ANAPC8
HAT_Syf1_CNRKL1_N
PknG_TPR
DUF6584
HAT_PRP39_N
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
124380631
NCBI-ProteinID:
XP_046697751
LinkDB
All DBs
Position
27:complement(6680300..6705555)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSNKEVKSALKSARDAIKNKEFKDALKHCKAVLKLEKNNYNAWVFIGVAASELEQPEQAQ
TAYRKAVELEPEQLLAWQGLANLYEKIDQPDFKAELPKIYQKLITLYETSDKVKYFEVSK
KLVDIYQTEKNFLQVARVWRRLIQVREAEDGIENFELLELWREMIRLLMGSVQEQDNETQ
QHLLSAFEKALQLTENVPSEDHKQLIQDYIKCLSNLSHEVVKMKEMCDIMLSLYPKDSYP
LAVLVEHYLHLDDCSEEAVKVYTRLLELDPVNSLAHFGLGKKALQDKKYEDAIKSFGLGL
RRMRSSVIGWYYHAQAELKMHKYCDSAMSSSQGLKGCAGFSEDWTQKLMRLKLEALVRTG
TEQSADEALGMLSQMPDASNDPALLVFKGRAYLQKEKLEEAFQVSSDLLSLHPGSVEGLT
LKGLTHGAKNEYQLAEQCFIDAASQRPDSGELYFLLGQLYWNMGEDMQRDRSKVHTHLLK
AAKLDPYLGSVFRYLGHYYREVAKDQGRARGCYKKAFELDSTDAEAGAATVDLSMEQGDM
DSALAVLQTVTERATPGSAKWAWMRRGLYHLKVGQHAQAVADLQAALRADPQDWVCWECL
GEAYLNRHSFTAALKAFAKAHMLHPSSIYSLYQMASIKQILGRYKEAAVEYQQIIETEEY
VPALKGLGECLLAMARTAMEDYLDGRAVDLIQEAIKYLFRAVQQRADLSCLWKLLGDACT
KCSSVSPNRVCVLVPGALCGREPANKNHTLDQKPLLSLGERCYGRALKLMAEAPSLWCDL
GLNYYHQARLFLSMSAEQDVQSLLEKALQCVKKAVMLDSGNHTYWNALGVVAMSKGVENS
ALAQHSFIKSIKAEPNNVVAWTNLGTLYLKNRNIELAHEAFKIAQSLEPLYVNCWIGQAF
IAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAVS
AAQVALTKYTERIQTDAEAFVMLGFLNEHMQLKKQATGAYKRAVGLLQNNPQREELCFAL
RGYARALCDTDQWEEAVRHYSSMPLEELHDLTGLALACFRAGHLPESINAYEKALAVAST
EKEKAYILTALALLQHRLGNKDTAKTLLFKCSLLKEPIPESLLCLCALGLVHGDATLASA
ALSELLKLDVAVRGTVEDQCLLTCTLLALQGNYNAVQREASRAVFRNPGNPSLWALLSRL
VPQYCPSKADGGAVAGSVACHASMTLGKRAMLYSGMNQLALGRHSGEDKSKNALKTIQRA
VLLCPDDPVGWVGLMAACHTENVACALSGSSPCREGLERVLMALVSEKVKSLQREDGLLA
QALEGWVLQQAVSGLKQSGQYDEAEALCSQVLSVSPEHPAVFLLLRQVQCESLLLSGARD
CIPPTVLDQLRAAVMANPTSVSAWHWLAEVYRSQGLLAQASVALKQSLQLASQLGHYNGK
LSSLLRLALLSLIPCMAGVGGVEWSSLVREACTEVLKLGPCPVALLFQALLQFSIKMGAR
ETRRLLEKIVYRSSSRDAKTVTAVARWYLLRHLHAKDDLELIDTLMMEAEAAGDIRLLKL
HKQLYP
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaagaagtcaaatctgctttaaaaagtgcacgagatgccatcaaaaacaag
gagttcaaagatgccctaaaacactgcaaggctgttctgaagcttgagaagaataactac
aatgcctgggtgtttattggagttgcagccagtgagctggagcagcccgagcaggcacaa
acagcctacaggaaagctgtggagcttgaacctgagcagttgcttgcatggcagggcctt
gcaaatctgtatgaaaaaatcgaccaaccagatttcaaagccgagctgcccaaaatctat
caaaaactcatcacattatatgaaacttcagataaagtcaaatactttgaagtgagcaag
aagttggtggacatttatcagacagaaaagaacttcttacaggtggcgagggtatggcgg
cgcctcattcaggtgagagaggccgaggatgggattgagaacttcgagctgcttgaacta
tggagagaaatgatcaggctgctaatgggctcagtgcaagagcaggacaacgagacacag
caacatctgctgtccgctttcgaaaaagctcttcagctcacagaaaacgtgcctagtgaa
gaccataagcaactcattcaagattacattaaatgcctgtcaaacctttctcatgaagtg
gtgaagatgaaggagatgtgcgatatcatgctttccctctacccaaaagactcctatcct
ctggcagttctagtggagcattatttacatttagatgattgcagtgaagaagctgtgaag
gtatacactcgtctcttggagctggacccggttaattcactggctcactttggtctgggt
aaaaaagctcttcaggacaagaaatatgaggatgctatcaagagctttggtcttggcctg
agacggatgcgctccagtgtcattggctggtattatcatgctcaggctgagctgaaaatg
cacaaatactgtgatagtgctatgtcctccagccaagggctgaaggggtgtgcagggttt
tctgaagactggacccagaagctgatgagattaaagctggaagcattagtgagaactggg
acagagcaaagtgcagatgaggctctggggatgctttcacagatgccagacgctagcaac
gatcctgctttgttagtgttcaaaggtagagcgtatttacaaaaggaaaagcttgaggaa
gcctttcaggtgtcttctgatttgctgagcttgcatcctggctctgtggagggtttaacc
ttaaagggactgacacatggagctaaaaatgaataccagctggcagagcaatgtttcatt
gatgctgcatctcagaggccagacagtggggagttgtacttcctgctagggcagctttat
tggaacatgggggaagatatgcagagggacagaagcaaagttcacactcatctgctgaag
gctgcaaagctggatccctatcttggctctgttttccgctacttgggtcactactacagg
gaagtggccaaagaccagggccgagctagaggctgctacaagaaagcatttgagctggat
tccactgatgcagaagctggagctgccaccgtggacctcagcatggaacaaggagacatg
gactccgctttggcagttcttcagacagtgacagagagagctacgcctggttcagctaaa
tgggcctggatgagaagaggcctgtatcatcttaaagtgggccagcatgcacaggctgtt
gcagacttgcaggcagcgttgcgggctgaccctcaggactgggtgtgttgggagtgtttg
ggcgaggcctacctgaaccgccacagcttcacagctgccctcaaagcttttgctaaggct
cacatgctgcatcccagctctatttacagcctctaccagatggcctccattaaacagatt
ctgggcaggtacaaagaggcagcagtggagtaccagcagataatagaaactgaagagtat
gtcccagctctcaaaggacttggagaatgtcttttggccatggctagaaccgcaatggaa
gactacctggatggaagagcagtagacctcatacaggaagccattaaatatttgttcaga
gcagtgcagcagcgtgcagatctctcatgtctgtggaagttgctgggagatgcttgtacc
aaatgcagctctgtttctcctaaccgagtctgtgtactggtgcctggagcgctgtgtgga
agagagcctgcaaataagaatcacacactggaccagaaaccgctgctgagtctgggggag
agatgctatggccgtgctttgaaactgatggcagaagccccgagcctgtggtgtgatctg
ggcctcaattactaccaccaggctaggctgttcctgtccatgtctgcagaacaggatgtg
cagtccctgctggagaaagctctgcagtgtgttaaaaaggcagtcatgctggacagtggg
aatcacacgtactggaatgcactgggggttgtagcaatgagtaaaggagttgaaaactct
gccctagcacagcacagtttcatcaaatcaatcaaagctgagccgaataatgttgtagca
tggacaaaccttggaactttgtatctgaagaatcgcaacattgagctcgcacacgaggcc
tttaagattgcgcaatctctggagccgctgtatgttaactgctggattggacaggcattc
attgctgagacagtaggaagctatgacaccatggatctcttcagacacactaccgagctc
agcactcatactgaaggagtgaagggttatgcctattgggtctgttccactctactggac
aagagtaaccgagactcagagctttaccgctacaacatagtccagatgaatgctgtttca
gctgcccaggtggccttaaccaaatatacagagaggattcagacagatgctgaagctttt
gtgatgttgggcttcctgaatgaacacatgcagctgaaaaagcaagcaaccggagcctat
aagagagctgtggggttgctccagaacaacccacaaagagaagaactctgcttcgcactc
cgaggctatgctcgggccctctgtgacacagatcagtgggaagaggctgtccgtcattat
tcctccatgccactggaggagctgcatgatctcacaggattggctcttgcctgctttaga
gccggacacctcccagaaagtattaatgcttatgagaaagctcttgcagtggcctcgact
gagaaggaaaaagcctatatactaacagctttggctttactacagcacagactggggaac
aaggacactgccaaaaccttactctttaagtgctctttgctgaaggagccaattccagag
agtttgctgtgtttatgtgctttgggcctggtccatggagatgccaccttggccagcgct
gctctttcggagctgctgaagttggatgttgctgtaaggggcactgtggaggaccagtgc
ctgctcacatgtaccctgctggccctccagggcaactacaatgctgtccagagagaggct
tccagagcagtgttccgaaaccctggaaatccgtctctctgggcactgctgtccagactg
gtgccacagtactgtcccagcaaagctgacggtggagctgtggcaggtagtgtggcatgt
catgctagcatgactctaggaaagagggcaatgctgtacagtggaatgaatcagttggcc
ttaggcagacattcaggggaagacaagagcaaaaatgctttgaagaccatccaaagagct
gtgctactctgtccagatgatcccgtgggatgggtagggcttatggctgcatgtcacaca
gagaatgtagcatgtgccctgtcaggctcctccccatgcagagagggtctagagagagtg
cttatggccctggtgtcagagaaagtaaaaagcctgcagagagaggatgggcttttggct
caagctctggaaggctgggtgctgcagcaggctgtatcaggactcaaacagagtggccaa
tatgatgaagccgaagccttgtgctcacaggtgttgagtgtctctcctgagcatcctgca
gtgttcctgttgctcaggcaggttcagtgtgagagccttttgctgtccggtgccagagac
tgcatccctcccacagtgctggaccagctgagagctgcggttatggccaacccaacctca
gtgtctgcttggcactggctggcggaggtgtaccgatctcagggtttgctggcacaggcc
tcagtggctctgaaacagagcctgcagctcgcctctcagctcggtcactacaacgggaag
ctcagcagcctgctgcgactcgccctgctctcactcatcccctgcatggctggagttgga
ggagtggaatggagcagtcttgttcgtgaagcctgtacagaagtgctaaaactaggtccg
tgtcctgtggctttacttttccaagctcttcttcagttctccatcaagatgggagccagg
gagacacggcgtctgctggagaagattgtttacagatcgagttcaagagacgcgaaaacg
gtaacggcggtggctcgctggtacctccttcgccacctgcacgccaaagacgacctggag
ctgatagataccctgatgatggaggctgaagcagcaggagacatcaggctgctaaagctc
cataaacagctgtacccctga
DBGET
integrated database retrieval system
