Silurus meridionalis (southern catfish): 124381855
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Entry
124381855 CDS
T08004
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124381855 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124381855 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124381855 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124381855 (col9a2)
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Others
124381855 (col9a2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124381855
NCBI-ProteinID:
XP_046699680
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Position
29:complement(2316291..2343284)
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AA seq
691 aa
AA seq
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MARDFNILRIAVLLQVLCLALAQVSGPPGSQGPRGPPGPSGTPGSDGIDGEKGPPGPPGP
PGQKGESGQPGPAGPPGDDGIDGLTGPKGERGPVGNPGPKGLQGPTGRAGPPGPGLPGLP
GPAGSIGLPGEIGLTGPKGATGLPGPPGLPGPSGKPGPPGKFLGLEEGSADFQCPTNCPP
GPKGPQGLHGMKGHKGHAGMLGAPGNIGKMGTKGDVGLSGEQGIPGPPGPQGLRGYPGMV
GRKGETGPQGYKGITGPIGLPGIPGKEGVRGPPGDAGEKGDKGDQGIRGLQGAVGKKGEN
GLPGIDGKDGNPGIPGIKGAQGQNGRPGPPGHQGAAGLPGSPGTKGGPGVKGEAGPRGLM
GTAGAPGPQGEPGPPGEAGMVGVPGPKGDRGERGPVGPQGIIGKPGNKGERGPNGVPGPQ
GLTGTKGDKGFQGKVGPKGDFGDPGVEGLAGEKGEKGLSGEPGPKGQQGVRGDQGHNGPT
GDPGKPGDQGPPGLPGPRGLHGVRGAPGMPGIQGPAGRDTSDQHIIEVVLKMLQERLAAL
AVSAKRGALGGAGVMGPPGPPGPPGPPGPQGAHGITGARGIPGIIGAAGQIGNTGFKGKI
GAKGERGDPGRPHPGPAGPPGLPGPPGLDGIARDGKPGERGPQGAAGQPGYPGKAGPPGL
PGFCEMAACLAASAYTSPRLQEAGTVKGPST
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctcgggactttaacatcctcagaattgccgtgctcctgcaggtgctgtgtctggct
ctggctcaagtgagtggtccacctggatctcagggccctcgcggtccccctggaccttca
ggaacccccgggtccgatggcatcgatggtgaaaaaggacctcctgggcctcctggacct
cctggtcagaagggagaatcaggccagccgggtccagccggtcctcctggggatgatgga
attgatggtttgactggaccaaaaggtgaaagaggtcctgttggaaatcctggacctaag
ggtctacaaggtcctactggtcgagcaggaccacctggacccggacttcctggacttcct
ggaccagcaggttcaattgggcttcctggggaaattggactcactggacccaagggggct
actggacttcccggacctccaggtttaccaggaccttcagggaaacctgggccacctggg
aagttcttgggtttagaagaaggcagtgctgatttccagtgtccaactaactgtcctcct
ggaccaaaaggtcctcaaggcctgcatggcatgaagggtcacaaaggacatgctggaatg
ctgggagctccagggaacattggaaagatgggcacaaagggagacgtggggctctccggt
gagcaaggaataccaggccctccgggtccacaggggctgagaggctatccaggcatggtt
gggcgcaaaggagagacgggccctcaaggttacaaaggtattactggacccattggactc
cctggaatccctgggaaagagggagttcgaggtcctccaggggacgctggggagaagggt
gataagggtgaccaaggcattagaggactacagggagcagttgggaagaagggagaaaat
ggtctcccagggattgatgggaaagatggtaaccctggcatcccaggaataaagggtgct
caaggccagaatggaagacctggtccacctggccaccagggggcagcaggtttgcctgga
agccctggcaccaaaggcggtccgggggttaagggtgaagcaggacctagaggtttaatg
ggaacggccggagctccagggcctcagggtgaaccagggccaccaggtgaagctgggatg
gtcggagttcctgggccaaagggtgacaggggtgagagaggacctgttgggcctcaggga
attattggcaagcctggaaataaaggagaaagaggacctaatggtgtcccaggacctcaa
ggccttactggcaccaaaggcgataagggattccaaggcaaagtgggaccaaagggagac
tttggtgatccaggggtggagggactggctggagaaaaaggagaaaagggtctgtctggt
gaacctggtcctaaaggacagcaaggagtgaggggtgatcaaggacacaacgggcctaca
ggcgatcccggaaaaccgggagaccagggtcctccaggtcttcctggacctcgaggcctc
catggagtgagaggtgcgccgggtatgccaggaatacagggaccagctggtcgtgatacc
tctgatcagcacatcatcgaagtggtcttgaagatgctgcaggaaaggttagctgctctg
gcagtgagcgctaaaaggggagcgttaggaggagccggagtaatgggacccccaggccct
ccaggacctcccggacctccaggtcctcagggagcccatggcattactggtgcccgaggc
attcctggcataattggagctgcaggccaaattggaaacaccggctttaaaggaaagata
ggtgcaaagggagaaagaggagaccctggtcgccctcatcctggtccagcagggccacct
ggccttccaggtcctcctggtttggatggaattgcacgtgatggcaagccaggagaaaga
gggccacagggtgcagcgggtcaaccaggctatcccggaaaagcaggccctccaggcctc
cctggcttctgtgaaatggcagcatgcctggcagcctcggcttacacttccccacgactc
caggaagccggcacagtcaagggaccgtccacttaa
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