Silurus meridionalis (southern catfish): 124386057
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Entry
124386057 CDS
T08004
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124386057 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124386057 (cnot1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124386057 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124386057 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124386057
NCBI-ProteinID:
XP_046705614
LinkDB
All DBs
Position
5:26112099..26131837
Genome browser
AA seq
2370 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSNSDLRGFAAQFLKQKLPDLLRSYVDADLGGSQEGGFXDIAIEA
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASHVARVLGMMART
HSGLSDGIALQSISAPGSGIWSDGKDKSDSSQPHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHAGFMIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQQSLMSPEVFC
FADFPCHAVVIDILKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPTIMGGLAPEKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMAANCSNVMNKPRQPPPGVMPKGRAPSTSSLDAISPVDPLTAMGSLNL
GGSATSHTQNMQGFPTPLSSAFSNPQSPAKAFPPLTNPNPSTAFGGISSLSSQLPGPLSS
GSLSGIGSGLGMPAVSSDPFGPRKMSTPGLNPPTFQHSDLSQVWPEANQHFTKEIDDEAN
SYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPDKE
LHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKDYP
QYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQPPKA
PQPGQVSTLVTTTTTTTTVAKTATITRPTAVGFKKDMPPSINTTNIDTLLVATDQTERIV
EPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLY
SNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKP
ILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVFRPQNPWTMAIMNVLAEL
HQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLEEQLSAPKKETKPPEEM
LPVVTSAAPSAPASTATTTTTGPPTPQFSYHDINVYALAGLAPHININGNVNPLLQAHPQ
LKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAHHMMRNL
TAGMAMITCREPLINNITANLKNTFAAALRAPTPQQREMMEEAANRIAQDNCELACCFIQ
KTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVGGVDPKQ
LAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQQTWPTDDMAHIYDKCISDLEQHLHAI
PPALAMNPQAQTLRSLLEAVVMARNSRDGITALGLLQKAVEGLLDATSGADAELLLSYRE
CHLLVLKALQDSRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHL
AQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTCAHSRANAPEGL
PQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSA
AAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAA
IIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQADFQ
QLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRI
FIARMLAHTPQQKGWPMYAQLLIDLFKFLAPFLRNVELNKPMQILYKGTLRVLLVLLHDF
PEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILT
NFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQA
IAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSC
TMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCA
PEIEKLFQSVAQCCMGQKQAQQVMEGTGAT
NT seq
7113 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
accaagaaaaactacagagccagccagcaagagatacagcatattgtgaatcgtcacggc
ccggaggcagacagacatcttctacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctaatccaggagtgtgtctcc
cttatcacaaagccaaattttatttcaacactctgctacgccattgacaatcctctgcac
tatcagaagagtttgaagccatcgccacatttgtttgctcaattgagtaaagttctcaaa
ctaagcaaggttcaggaggtgatttttggcctcgctcttctgaactcgagtaactcagac
cttcgtggatttgcagctcagttcttgaagcagaagctgcctgacctcctgcgctcatac
gtggacgctgaccttggagggagccaggaaggtggcttcnaggacattgccatagaggct
ctgcacctgctgctctcacaccttctgtttgggcagaaaggctccagcggagtcgggcaa
gaacagattgacgccttcctcaaaacactgtgcagagatttcccgcaagagcgctgccct
gtggtgcttgcaccacttctgtaccctgagaaacgggacattctcatggacaggatttta
ccagactctggagagttagccaagaccatgatggagagttcccttgcggagtttatgcaa
gaagttggctatggcttttgtgcaagtgtcgatgaatgtaggaacataatcctgcagtat
ggagtgcgtgaggtgactgccagccatgtggccagagtgctgggcatgatggctcgcact
cactctggcctctctgatggaatcgcactacagtccatctccgcaccgggcagcggcatc
tggagcgacgggaaagacaaaagcgacagctctcaaccacacacctggaatgtcgaagtt
ctgattgatgttgttaaagaacttaaccccaatctcaatttcaaagaggtcacctacgag
ctggaccatgcgggcttcatgatccgggacagtaaagggctgcagattgttgtgtatggt
attcagagaggcctgggtatggaggtcttccctgtggacctcatctatagaccatggaag
catgcagagggacagctctccttcattcaacaatccttgatgagtccagaggtgttctgc
tttgcggatttcccctgtcacgccgttgtcattgacatcctcaaagctccacccgaggac
gacaacagagagatagccacatggaagagcctggacctggtagagagcctgctacgactg
tccgagttgggccagtacgagcaggtgaagcaacttttcagcttccccatcaagcactgt
ccggacatgctggtgctggcactgctgcagatcagcacatcctggcacacactgcgccat
gagctcatctcgacgctcatgcccatcttcctgggcaaccaccccaactctgccatcatc
ctacattacgcctggcacgggcagggccagtcgccatccattcggcagctcatcatgcac
tcgatggcagagtggtacatgaggggggagcagtacgaccaggccaagctctcgcgcatc
ctggacgtagctcaggacttgaagtctctatcgatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcctcccgccgtgaatacctcaaactagacaaatgg
ctgactgataaaatcagagagcatggtgagccgtttattcaggcatgcgtaactttcttg
aagagacgctgtcccaccatcatgggaggactggctccggaaaaagaccagcccaaaagt
gcacaactgcctccggaaaccttggcgacgatgctggcctgtctgcagtcctgtgcagga
agtgtatctcaagagctgtctgagacaatcctaaccatggcggccaactgtagcaatgta
atgaacaagccacgccagcctccaccaggagtcatgccaaagggccgggcacccagcacc
agcagtctggatgctatttccccggtggaccctctcactgcaatgggctctttaaatctg
ggtggctcagccacttctcacacgcagaacatgcaaggcttccccacacctctgagctcg
gcctttagcaaccctcagtcccctgccaaggccttcccacctctgaccaatcccaacccc
agcacggccttcgggggcatcagcagtctctcttcgcagctcccaggtccgttgagttca
ggcagcttaagtggcattgggtcaggcttgggaatgccagcagtgagcagtgacccattt
ggtccacggaagatgagcacaccagggctgaacccgcccaccttccagcattctgacctc
tctcaggtgtggcccgaggcaaaccagcactttactaaagagatcgacgacgaggccaac
agctatttccagcgaatctacaaccacccccctcaccccaccatgtctgtggatgaggtg
ctggagatgctgcagaggtttaaggactcgaacatcaagcgggagcgggaggtgtttaac
tgcatgctccgcaatctttttgaggagtaccgtttcttccctcagtacccagataaagag
ctgcacatcaccgcgtgcctgtttgggggcatcattgaaaagggcctggttacttacatg
gcccttggcctcgccctgcgatatgtcctggaagcattgcgtaaaccctatggctccaaa
atgtattacttcggtatcgctgcactggatcggtttaagaacagattgaaggactaccca
cagtattgtcagcacttggcttctataggccattttctccagtttcctcaccatttgcag
gagtatatcgagtacggccagcagtctcgtgaccctccagtgaagatgcaaggctccatt
accacaccaggcagcctggctctggctcaggcccaggcccaatcccagcctcctaaagct
cctcagccaggccaagtcagcaccctggttaccaccacaaccacgaccaccacagtcgcc
aaaactgccaccatcaccaggcccactgcagtaggttttaagaaggatatgccaccttca
ataaacaccacgaacatcgacacactactagtggctacagaccaaacggaaaggattgtg
gagcctccagagaacattcaggaaaagatagcgttcatttttaacaacctgtcccaatcc
aatatgactcaaaaggttgaagaactaaaggagactgtgaaggaggagtttatgccctgg
gtgtctcagtacctcgttatgaagcgtgtcagcatcgagccgaactttcacagcctttac
tccaactttcttgacacactgaagaatccagagttcgttaaaatggttctgaatgaaacc
tacaggaacattaaggttctcctaacctctgataaggcagctgctaatttctctgatcga
tccctgctgaagaacttgggccactggcttggaatgataaccctggctaagaacaaaccc
attctatatactgatttggagttgaaatctctcttactggaggcttatgttaaaggccag
caagagctgctatatgtggtcccgtttgtggcaaaagtccttgagtcaagtctgcgtagt
gtggttttcagaccgcagaatccctggaccatggccatcatgaacgtattggctgagcta
caccaggagcatgatctgaagttaaacctgaagtttgagatcgaggtgctgtgtaagaac
ttgtctctggacattaatgacctgaaacctgggaacctgctgaaagacaaagagaagctg
aaaaatctggaggagcagctctctgcaccaaagaaggaaacgaagccacctgaagaaatg
ctgccagttgtcacttcagctgctccttcagctcctgcttccactgcgaccaccaccacc
actgggccgcccacaccacagttcagctaccatgacatcaatgtgtatgcactagcaggc
ctggcccctcacattaacatcaatggcaatgtaaatccgctgctgcaggcacacccccag
ctgaagcagtgcgtgaggcaggcgatcgaacgcgccgtgcaggaactcgttcacccagta
gtggaccgctccatcaagatcgccatgaccacctgtgagcagatcgtcagaaaggacttt
gctctggattccgaggaatcgcacatgcgcgtcgccgcccaccacatgatgcgcaattta
actgctggaatggccatgatcacctgcagagagccacttattaataacatcaccgccaac
ctgaaaaacactttcgctgctgccctcagagcaccgacgcctcagcagagggaaatgatg
gaggaggcagctaatcgcatcgctcaggataactgcgagctggcatgctgcttcattcag
aagactgctgtggagaaagccggacccgagatggacaagagattggccactgagtttgag
ctaaggaaacatgctcgccaggagggccggcgctactgtgatcccatggtgctcacttac
caagcagagcgcatgccagagcagatccgcctcaaggtgggtggtgtggaccctaagcag
ctggctgtttatgaggagtttgcccgcaatgtgccaggcttcctgcccagcaatgatctt
tctcagcccactggatttctggcccagcctatgaagcagcagcagacgtggcctacggat
gatatggctcacatctacgataagtgcatctctgatctagaacagcatctgcatgccatt
cctccagctttggccatgaacccacaagcccagaccctgcgcagcctgctggaggctgtt
gtgatggcacgaaactctcgcgatggcatcaccgcactgggcctgctgcagaaagcagtt
gagggtttgttggatgccaccagtggtgcagatgctgaattgctcctgagctacagagag
tgccacctgctggtgctaaaggctctgcaggacagccgtgcctatgggccccaatggtgc
aacaagcaaatcaccaggtgcctgattgagtgtcgtgatgaatacaagtacaatgtggag
gcagtcgagctcttgatcagaaatcacctagtcaacatgcagcaatatgatctacacctt
gcacagtcaatggagaacgggctgcattacatggcagtagcttttgcgatgcagctagtg
aagctgctgctggtggacgagcgcagcgtaagccacatcactgaagcggacctgttccac
actatcgagaccctgatgaggacctgtgcacactccagagccaatgcacctgaaggcctg
ccccagctgatggatgtggttcgctccaattatgaggccatgatcgaccggcaccacgga
ggacccaacttcatgatgcactctgggatctcgcaagcgtcagaatatgatgatcctccg
ggcctgcgtgagaaagcggagtatctgctaagagagtgggtcaatttgtaccattcggct
gctgctggcagggacagcaccaaagctttctctgcatttgtgggccagatgcaccagcaa
ggcattctgaagactgatgacctcatcactcgtttcttccggctgtgcacggagatgtgt
gtagaaatcagttaccgtgctcaggccgagcagcagcacaacccagccgccagtgccgcc
atcattcgcgccaaatgctaccacaacctggatgctttcgttcgcctcattgccttgctt
gtcaagcactctggagaggccacaaacacagtcacaaagataaacctgttaaacaaggtt
ttgggcattgtagttggcgtgttgatccaggatcatgacgtgaggcaggcagatttccaa
cagctaccataccatcgcattttcatcatgctgctgctggaacttaatgcccctgagcat
gtcctggagaccatcaacttccagaccctcactgctttctgcaacaccttccacatcttg
aggccaactaaagcacctggctttgtctatgcctggctggagctcatctctcatcgaatc
tttatagccagaatgctggcacacaccccacagcagaagggatggcccatgtacgctcag
ctgctgatcgacttgtttaagttcctggccccttttctgaggaatgtcgagcttaataaa
cctatgcaaatcctctataagggcaccttgcgggttcttctggtcctgctgcacgacttc
ccagagttcctctgtgattatcattacggcttctgcgatgtgattccacccaactgcatc
cagctgagaaatctgattctgagtgcctttccccgcaacatgaggcttccggaccccttc
acccccaacctcaaggtggacatgctgagcgagatcaacatcgcaccacgcattctcacc
aacttcactggcgtgatgccgtctcagtttaagaaggatctggactcgtacctgaagacc
cgctcgcctgtcactttcctctcagagctgcgcagcaacctgcaggtctccaatgagcca
gggaaccgttacaacatccagctgatcaacgctctggtgctgtacgtaggcacgcaggcc
atcgctcacatccacaacaagggcagcacaccttccatgagcaccatcacccactcggcg
cacatggacatcttccagaatctcgcagtggacctggacactgagggtcgttatttgttc
ctgaacgcgatagccaatcagctgcgttacccaaacagccacacgcactacttcagctgc
accatgctttacctgtttgctgaagccaacgccgaggccattcaggagcagatcactcgg
gtactactggaaagattgattgtgaacaggccacacccttggggactcctcatcaccttc
atcgagctgatcaagaatccagcttttaaattctggagccatgactttgtgcactgtgcg
ccggagatcgagaagctgttccagtctgtggctcagtgctgcatggggcagaaacaggcc
caacaggtgatggagggcacgggtgccacttag
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integrated database retrieval system
