Silurus meridionalis (southern catfish): 124386530
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Entry
124386530 CDS
T08004
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
124386530
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124386530
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
124386530
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
124386530
NCBI-ProteinID:
XP_046706387
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Position
5:complement(26257794..26271312)
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AA seq
858 aa
AA seq
DB search
MMSKPQQQLESRDLELGHLVRQSPLHVSRTPSPSSPGSVLDLPNVPVYPRLPPISPSRQL
SGLFNPTFNAEDELKSTRPSASSRLSIHPAVNVEDMDSDSEQHGKTSHHMPQIITPQDPN
LKTLTVPGPSKSTRTRDRKPQTIWTKIKKLYSSGDDEDDELETAFRAWPSQSSITSGDDV
LKERPTSAASQASTMVNERLQELVKLFKERTERAKEKLIDPDDLDEDTPATPGAPPPPEP
MKEPEPAEESPSAPPKEEVEQEVYTKLLCFKVKPQSRIGRVIQYRFPASIDPFTNLGYVL
WLFFVTLAWNWNVWMIPVRWAFLYDVKGSLYLWLIADYLCDAIYILDILLFQPRLQFICG
GDIISDKKEMRANYMKDLRFKLDVISLLPLELFYLLDGVKPLLRCPRILKILSFFEFNTR
LEAILTKAYVYRVIRTTSYLLYSLHVNACLYYWMSTLRGLGATPWVYNGEGNAYIRCFYF
AVKTLITIGGLPEPTALEEYIFQLINYFIGVFAFSIMIGQMRDVVGAATADQTQYRSCMD
NTVKYMGSNRIPKDVQNRVKTWYNYTWQSQGMLDEDELLMQLPDKMRLDIAVDVNYSIVS
KVPLFEGCDRQMIYDMLKRLRSVVYLPGDYVCKKDEVGREMYIIKSGAVQVVGGPDGKTI
FVTLKAGSVFGEISLLAVGGGNRRTANVISHGFANLFILDKKGLNEILVHYPESQKLLRR
KAKKMLADKNPEKKKEEEKEPVQVIPKRKETPKLLKAALEMTEKEKSGLRGTLAKMKGKK
NNKSCVSLQPSVCSSVLPGSPMERQHSEQEADILSQISDSVIQGLPISPSGLEDETCSVQ
EGPTGNERTIVGKDRTAE
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctaaacctcagcaacagctggagagtcgggacctggagctgggccacctggtc
cgccagtcccctctccatgtctcccgtaccccatccccttcatcacccggctccgttctg
gatttgcccaatgtgcccgtttatccccgtcttccccctatcagtccatcacgtcagctc
tcgggcctcttcaaccctacctttaatgccgaggatgaactcaaatccactagaccttca
gctagctccagactgagcattcaccccgctgtaaatgtagaagacatggactcagacagt
gagcagcacgggaaaacttcccaccacatgccccagatcatcaccccccaagacccaaac
ctcaaaaccctcactgtgcctgggccatccaaatcaacccgaaccagggacagaaagcca
cagactatttggacgaaaataaagaagctgtattcttcaggagatgatgaagacgacgag
ctggagacggcattcagagcctggccgagtcaaagcagcatcacgagtggcgatgacgtc
ctgaaggagcgtcctacgtcagcagccagccaggccagtaccatggtgaacgagcgtctg
caagagctggtcaaactgttcaaagaaaggacggaacgtgccaaggagaaactgattgat
cctgatgacttggatgaggacacacctgccactcctggagctcctcctcctcctgagcct
atgaaggaaccggagcctgctgaggaaagtccatctgcccctcctaaagaagaagttgaa
caggaagtgtataccaaactgctgtgcttcaaggtgaagcctcagtccaggatcgggcgt
gtgattcaataccgtttcccagccagcatcgacccgttcaccaaccttggatacgtcctg
tggctcttttttgtcactttggcctggaactggaacgtgtggatgatcccggtgcgatgg
gcttttctttacgacgttaaaggatccctttacctatggctgatcgccgactacctgtgc
gatgccatctacattctggacatcctgctcttccaaccgcgcctgcagttcatctgcgga
ggcgatattatcagtgacaagaaggaaatgagagccaattatatgaaagatctgagattt
aagctggacgtgatcagtcttcttccactggagctcttctatcttctagatggggtcaaa
cctcttcttcgctgcccacggatactgaagatcttgtctttctttgagttcaacacacgt
ctggaggccattttgaccaaagcctatgtctacagagtcattcgcaccaccagctacctg
ctttactccctgcatgttaacgcctgcctttattactggatgtcgaccttacgaggcctt
ggggctacgccctgggtgtacaatggagagggcaatgcatacatccggtgtttctacttt
gctgtgaagactctaatcactatcggtggattgccagaaccaaccgcactcgaagagtat
atttttcagctcatcaactactttatcggtgtattcgccttctccatcatgattggacag
atgcgagatgtagtgggcgctgcaacagctgatcagactcaataccgctcgtgtatggac
aacactgtgaagtacatgggttctaatcgcatccctaaagacgtgcagaaccgggtaaag
acctggtacaactacacatggcagtctcagggcatgctggatgaagatgagttgcttatg
cagttgccagacaagatgaggcttgatatagcagttgatgtgaattactcaattgttagt
aaagtgcctctgtttgagggctgtgacaggcagatgatttacgacatgctgaaaagactc
agatcagttgtgtatcttcccggagactacgtatgcaaaaaggatgaagtaggcagagag
atgtacatcataaagtcaggagcggttcaggtagtcggcggtccagatggcaaaacaata
ttcgtgactctgaaagcgggatctgtgtttggcgaaatcagcttgttagcggtgggagga
ggaaaccggcgaaccgccaacgtcatatcacacggttttgctaatctcttcatcttggac
aagaagggcctcaacgaaatccttgtgcattaccccgagtcccagaaactgctacgcagg
aaagcaaagaagatgctggcggataaaaatccggagaagaagaaagaggaggagaaggag
ccagtgcaggtgatccctaagcggaaggaaacccctaaactgttaaaagcagcactggaa
atgactgagaaagagaaatcaggcctgcgaggcacactggctaagatgaagggaaaaaag
aataacaagtcctgtgtttcattgcagccatccgtgtgttcctcagtgctaccaggctcc
ccgatggagaggcagcactcggagcaagaagctgacattctgtctcagatctcagacagc
gttatacaaggacttcccatcagcccctccggccttgaagatgagacatgctctgtgcag
gagggaccaacaggaaacgagaggacgatagtggggaaggacaggacggccgagtaa
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