Silurus meridionalis (southern catfish): 124388068
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Entry
124388068 CDS
T08004
Symbol
thoc1
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124388068 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
124388068 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124388068 (thoc1)
03041 Spliceosome [BR:
smeo03041
]
124388068 (thoc1)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124388068 (thoc1)
Spliceosome [BR:
smeo03041
]
Complex C
Other components
EJC/TREX
124388068 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124388068 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
HEPN_Swt1
Motif
Other DBs
NCBI-GeneID:
124388068
NCBI-ProteinID:
XP_046708659
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All DBs
Position
6:complement(31832933..31841352)
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AA seq
650 aa
AA seq
DB search
MAPVVFNSVEARDKFTTATRNALESRSCKPLMSVFNHFPANETEKKSTLDQSLRVVLEEQ
IVKHADVEDHLSLISISISAVTEAICSASTPFLLLGDVLDCLPLDQCDRIFSFVEENVST
WKSSSFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENITVFNKNEQESTLGQQSSEVKEDGMEEGEMGDEDTPAPCAIPIDYNLYRKFWTLQDY
FRNPVQCYDKFSWITFIKYSDETLAVFKSFKLDDTQASRRKREEMHTAGGEHVYFAKFLT
SEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNCVLNDDQTSWMEETTKLVYQL
LRETPPDGERFAVMVERILNTEENWNAWKNEGCPSFVKERAADAKPQRPYRKRPAPXDFL
GKGPERKILMGNDELTRLWNLNPDNMEACKTDSREFMPTLEEFFEEAIEQADPTNMVEDQ
YKVVRNSNYGWRSLRLLSRRSPHFFQPTNQQFKSLEDYLENMVIKLAKELPKDIPSEEIK
TGEEEDENGDNLLKESNDSPSIQSKLVTNSQMDEIAKKLGAQWKKLAPHLDVKEAEIRDI
EADSDDMELQAKMMLVSWQDREDAQATMESLVTALNGAGFGDIAQCFSET
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcgccggttgtgttcaattcggtagaagcgagagataaattcacgactgccaccaga
aatgctctggagagccgaagctgcaaaccgctgatgagcgtttttaaccatttccctgca
aacgagacggagaagaagagcactctggaccagtccctgcgggtcgtcctggaggagcag
attgtcaagcatgcagatgtggaggatcatctctccctcatctccatcagcatcagcgcc
gtcaccgaggctatctgctcagccagcactccgttcctgttgcttggagacgttctcgac
tgtctccctctggatcagtgcgaccggatcttctcattcgtcgaggagaacgtctccaca
tggaaatctagttccttctactcagcagggaagaactacttgttgaggatgtgtaacgat
ctcctgcgtaggctgtctaaatcccagaatacggtgttctgtgggaggattcagctcttc
ctcgctcgtctcttccctctgtctgagaaatcaggtctgaacctccagagtcagtttaac
ctggagaacattacggtgttcaacaagaacgaacaggagagcacgctcgggcagcagagc
tctgaggttaaagaggatgggatggaagaaggagaaatgggagatgaagacacacctgct
ccatgtgccattccgatagactacaacctgtacaggaagttctggacactgcaggattac
ttcaggaacccagtgcaatgctatgataagttctcctggatcaccttcattaagtactca
gatgagacattggcagtgttcaagagctttaagctggacgacactcaggcctccaggagg
aagcgtgaggagatgcatacagccggaggggaacatgtttattttgcgaagttcctaacc
agtgagaagttaatggatctgcagcttagtgacagtaacttcagacgtcacatcctgctc
cagtacctcatcctcttccagtacctcaagggtcaggtcaagttcaaaagctccaattgt
gtcctcaatgatgatcagacgtcctggatggaggagaccacgaagctcgtatatcagtta
ctcagagaaacgcctcccgatggtgagaggtttgctgtgatggtggagcgcattctaaac
acggaggaaaactggaacgcctggaagaacgagggatgtccaagctttgtcaaagaaaga
gccgcagacgctaaacctcagcggccctacaggaagcgcccggcgccgnaggacttcctg
ggtaaaggaccggagcgtaaaatcctcatggggaatgatgaactcaccagactgtggaac
ctcaatcctgacaacatggaggcctgcaagactgacagcagggagttcatgccaacactg
gaggagttttttgaggaggccattgagcaggctgacccgaccaacatggtggaggatcag
tacaaagtggtgaggaactcgaattacggttggagatctctccgtctcctgtcacgccgc
agtccacacttctttcagccgaccaaccaacagttcaagagtttagaggattatctggag
aacatggtgatcaaactggccaaggagctgcctaaagacattccatctgaggagataaag
acaggagaggaggaggacgagaatggagacaacctgcttaaggagagcaatgacagtccc
agcattcagagtaaacttgtgacaaacagccagatggatgaaatcgctaagaagcttgga
gcacagtggaagaagctcgcccctcacctggacgtgaaggaggcggagatacgcgacatc
gaagccgacagcgacgacatggagcttcaggccaaaatgatgctggtgtcctggcaggac
cgcgaggatgcgcaggccaccatggagagcctggtgacggctctgaacggcgctggcttc
ggcgacatcgcgcagtgcttcagcgagacgtga
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