Silurus meridionalis (southern catfish): 124392409
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Entry
124392409 CDS
T08004
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124392409
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124392409
09142 Cell motility
04820 Cytoskeleton in muscle cells
124392409
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124392409
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Others
124392409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
124392409
NCBI-ProteinID:
XP_046715366
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All DBs
Position
10:complement(24455056..24499281)
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AA seq
944 aa
AA seq
DB search
MRISVSATRRWAWQGVMADCMTRLALLTMLCAPALTQLDLNRLDGDTVCPPLRNGQDDLP
GFDLITQLQSDITPLKGVRKVDGSTSTQLAYRLDREASFQIPTRPTFPRGFPSEFSFMTT
FRMIKNTVNKVWNLWQVVDEDGLKQVGMRLNGDQQALEIFLTTLEGDLQTVTFPGLSVLF
NTKWHKVMIGVESEMVTLYVDCQPVDQKPIKEKGYVSTDGETLFGRLDADPNSSVVFEVQ
WMLIHCDPKRAQRESCTELPVAEMYANAEPDPKPIPGPAGPPGPAGPRGPPGEDGRDGRD
GIPGTPGTPGASGSKGEKGEIGLPGQRGLQGLPGPSGPMGPMGPMGPRGQIGERGLQGFP
GPAGPPGSEITGPPGLPGKPGIPGDEGNIGPEGPPGARGSNGFPGPPGPPGPPGPPGGNP
EGSGENCQAVCPAGPQGLPGLPGIKGHRGLAGVDGPPGAAGEKGDRGTVGEPGPQGRPGE
DGLRGPIGYPGEHGDKGDRGPPGFNGNPGPTGPPGSPGVEGIRGRDGPEGPKGDEGVAGS
PGTKGDTGAKGDPGDSGRNGLDGEPGLPGEKGEPGLPGAGGLRGIVGIPGLPGKQGFVGP
VGQKGDIGAEGPVGPAGLPGKPGERGAPGDDGIPGVKGVTGDAGKPGPIGPMGLQGNPGD
KGDRGVMGPRGIKGHTGHKGDQGPVGSVGPKGTEGAPGIPGSTGGKGDQGPPGFPGIKGD
RGEKGQRGATGADGRPGQPGHEGLAGPQGAPGLEGNRGQLGPPGPRGLPGPKLSDEKIRQ
ICSAVVEEHLDAYKKELTKKPLPIATPGIPGPAGPPGPPGPAGDAGGVGAMGPPGPQGPP
GFYGLPGKQGPKGDTGTKGDKGDNGVGVQGLPGEPGVQGPPGKPGIGKDGQNGARGEAGT
PGIPGTPGNRGPSGAPGMCDPSDCFRPQPLYLMGGKKPMNIKGP
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgcgcataagtgtgagcgcaacacggaggtgggcgtggcagggggtgatggcagactgt
atgacccgtctagctctcctcaccatgctgtgtgctcctgcactcactcagctggattta
aacagactggatggagataccgtgtgcccaccactgaggaacggacaagatgaccttcca
ggtttcgacctgatcacccagttacaatcggacatcactccgctgaagggtgtgaggaag
gtggatggctccacgtccactcagttggcctacagactcgaccgtgaggccagtttccag
atccctaccaggccgacattcccaagaggcttcccctcagagttctcgttcatgaccaca
ttccgcatgatcaagaacacggtgaacaaagtgtggaacctgtggcaagtggtggatgag
gacggcttaaagcaggtggggatgcgtctgaatggggaccagcaggccctcgagatcttc
ctcaccactttggagggagacctgcagaccgtcaccttcccaggcctctctgtgctcttc
aacaccaagtggcacaaagtgatgatcggcgtggagagcgagatggtcacgctatacgtg
gactgccagcctgtcgaccagaagccgatcaaggagaagggatacgtcagtacggatgga
gagacgctctttgggagactggacgccgatcccaacagctctgtggtgtttgaggtgcag
tggatgctgattcactgtgacccgaagagagctcagagagagagctgcaccgaacttcct
gttgctgagatgtatgccaatgctgagcctgaccctaaaccaatccctgggcctgctgga
ccaccgggtcctgcaggacctcggggacctcctggagaagatggccgtgatggtagagat
ggtattccaggaactccaggtactccaggtgcatccggcagtaaaggggaaaagggcgag
attggtctgccaggacagagaggattacaaggacttccaggacccagtgggccgatggga
cccatggggccaatggggccgaggggacagattggagaaagaggtcttcagggtttccca
ggcccagctggaccacccggatctgagatcactggaccacctgggcttccaggcaaaccc
ggtatcccaggagacgagggcaacattggtcctgagggcccacccggagccagaggatcc
aatggatttccaggacctcccggcccacctggcccccccggcccacccggcggaaatcct
gaaggaagtggcgagaactgtcaggctgtgtgccctgccggacctcagggacttccaggc
cttccaggcataaagggacacaggggactcgccggagtggacggacctccaggtgctgca
ggtgaaaagggagacagaggaacggtaggagaacccggtcctcagggacgtccaggagaa
gatggtctgagaggaccgatcggttaccctggagaacatggtgataagggagatcggggt
cccccaggatttaacggcaatcccggacccacaggacctccaggatctccgggtgtcgaa
ggtatccgaggacgtgatggacctgaggggcccaaaggtgacgagggtgtagcaggttct
ccaggtaccaaaggtgacacgggagcaaagggagatcctggtgattcaggcagaaatgga
ctggatggagaaccaggtctaccaggggaaaagggagaacctggactacctggagctggt
gggctgagaggcattgtgggaatcccaggtttaccaggaaaacaggggtttgtgggacct
gtgggtcagaagggtgacattggagctgaaggtcctgtaggtccagctggtcttcctggt
aaaccaggggaaagaggagctcctggtgatgacgggatccctggggttaaaggagtcaca
ggtgatgcaggaaaacccggtccgatcggccccatgggacttcagggaaacccaggtgat
aaaggagatcgtggggtcatgggtcctcgtgggatcaaaggtcacacaggacacaaagga
gatcagggtcctgtaggctctgttggtccaaaaggaactgagggtgctcctgggattccg
ggcagtacaggaggtaaaggggatcagggtcctccaggatttcctggaatcaaaggagat
cgaggagagaaaggacagagaggagccactggtgctgatggacgtccaggacagccggga
cacgagggacttgccggacctcagggagcaccaggcctggaggggaacagaggacaactg
ggaccaccaggacctcggggattacctggtcccaaactgagcgatgagaagattcgtcag
atttgttctgctgttgtggaggaacatctggatgcttataagaaagaactgactaagaaa
cctttgcccatcgctacccctggtattcccggacctgctgggccacctggacctcctgga
cctgctggggatgctggaggtgttggagcaatgggacctccgggccctcaggggccgcca
ggcttttacggcttacctggaaaacaaggacctaaaggtgacactgggacaaaaggagac
aaaggagataatggagttggagtccaaggacttcctggagagccaggagttcaaggacct
cctggaaaacccggcatcggtaaagatggacaaaatggtgcccgaggagaagcaggaact
ccgggtatcccagggaccccaggtaacagaggcccttcaggtgcccctggcatgtgcgac
ccctcggactgctttaggcctcagcctctttacctaatgggtggcaaaaaacccatgaac
attaaggggccatga
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