Silurus meridionalis (southern catfish): 124396230
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Entry
124396230 CDS
T08004
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1 isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
124396230 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124396230 (cngb1a)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
124396230 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Activator-TraM
Motif
Other DBs
NCBI-GeneID:
124396230
NCBI-ProteinID:
XP_046721281
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All DBs
Position
13:complement(22465765..22505909)
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AA seq
1372 aa
AA seq
DB search
MFSWVVKVVPQPPEKPVKPEEEVKGNTQQTLEPSVKEQKVQKEANPAKLKEDKVSEEIST
QGGVLTWISQGLTSALPQPATTPQTDKAESDAKQQEENSTSKANEETGVITWIVQGLGKV
VPQPDDKHKQQTESQVTEVPKVVPEVKVEPTVQEVKEVKEIKVEPEPPPKAPVVEVVPDA
EPEGDQSLTPKVMEWIKQGFEKVVPQPGHSPSVTDSSEKKEPTTDTAPLISKAPELSAAE
ETTKSTNVEGEANVVGWIVQGLGRIMPQPVVKPKEDTSDTVQNIYILQEDCVQEENLVVE
QNLVLEKDMVLEEVDSDWEQQQVKQGGLLVEKLEIQDETQMEDQICSPLEVLHNTTPYIL
LTQQEDAETQTERWTPLIENIRHEAEEAALVAMQERLVREHLEAARMAEELARQAAELAV
RQLEEEHTVIRITESERLSEQDNGEQLFNIQEEENEDDPELQPLREESEEDSGESKNAEA
DIKRCLVDVCLVEDLQTHKTEIKEQMPQKEASPEPPPASQPEIVHTPPLKTTVQPKPDGE
DQARANTPSPIESSSVKSPPLVMSPDVINQPETASSGPSPPAIIQEPKELKEECGECPHV
NVEEVEDASIPTVPQIVEPQESNAVTLTVPVPVMAIQSKAVHIEKVLQTEEQIEGDEMEK
EETLTPRRGLLTVEEEDSERPFSSASQTSVVVNERLQVLIRLFKERTERAKERLIDPDES
EEESPSATPSKKAAAAPPPPPPPPDEEKKDVPAGDEIEEEQFLEFMGYQVKVPKMPQMPD
WLRAIVEYRFPSSIDPFTDMIYVVWLFFVMCAWNYNVWLIPVRWAFPYQTSENIHLWLLA
DYLCDAIYILDITVFQPRLEFVRGGDIVCNKKDMREHYMKTERFKMDVISLMPLDILYFF
TGVKSILRFPRLLKYMAFFEFNDRLEAVMKKAYIYRVIRTSLYLLYSLHCNACLFYWGSD
YEGLGSTKWVYDGRGNSYIRCYYFAVKTLITIGGLPDPTTVFEIVFQLVNYFVGVFAFSI
MIGQMRDVVGAATAGPAYYRSCVDSTVKYMTAYRIPREVQNRVKTWYDYTWQSQGMLDEQ
ELLIQLPDKMRLDIAVDVNYTIVSKVALFQGCDRQMIFDMLKSLKSVVYLPGDYVCKKGE
IGREMYIIKAGEVQVVGGPDGKTVFVTLRAGSVFGEISLLAVGGGNRRTANVVAHGFANL
FILDKKDLSEIMVHYPESQKILRKKAKKMLTKDKKPEEEKGSGKESGQVISTRQETPKLF
KAALKVGKGEAFAKLKETYKDTGATLQPSDSTAASTAAAPVPPPSPIHRRSPIQCTVTQD
DADEDMVAQTTDSTMIIRITPHQHGEEILSVEMAEEEDGKAETTDQEEKKDK
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgtttagttgggtggtgaaagttgtccctcaacctccagagaagcctgtaaagccggaa
gaggaagtcaaaggcaatacacaacaaacattagaaccatcagttaaggagcaaaaggtt
caaaaagaagccaatcctgctaagctgaaagaggataaagtttcagaagaaatcagtact
cagggtggtgtattgacctggatttctcagggtttgaccagtgctctccctcagcctgca
actacacctcaaacggacaaggcagagagtgatgccaagcaacaagaggaaaacagcacc
agtaaagcaaatgaagagacaggggtgataacctggattgtgcagggattaggcaaagtg
gttccacaacctgatgacaagcacaaacagcagactgaatcccaggtgactgaggttcca
aaagtagtgccagaggtgaaggtagagcccaccgtacaggaggttaaagaggttaaagaa
attaaagtggaacctgagcctccacctaaagcccctgtggtggaggtggttcctgatgca
gaacctgaaggagaccagtccttaactcccaaggtaatggagtggataaagcaaggattt
gagaaggtggttcctcagcctggacactctccatctgttacagattcttcagaaaaaaag
gaacctactacagatactgcacctctgatttcaaaggcacctgaactctcagcagctgag
gaaacaaccaagagcacaaatgtggagggggaagccaatgtggttggctggattgtacag
ggactcggtcgcattatgccacagcctgttgtgaaaccaaaagaggatacttcagataca
gttcaaaacatctatatcctgcaagaggactgtgtgcaagaggagaacctagtagtggag
caaaacctggtgctggagaaggacatggtgctggaggaggttgactcagactgggaacag
cagcaagtcaagcagggtggtttgcttgttgagaagctggagatacaggatgaaactcag
atggaggatcagatttgctctccactggaggttctacataacaccacaccttatatcttg
ctcacacagcaggaagatgctgagacacaaacagagcgctggacacctttaatagaaaac
ataagacacgaggctgaggaagcagctttggtcgccatgcaagagagactggtgcgtgag
catctggaggcggcgaggatggcggaggagttggcacgccaggctgctgaattggcagtg
agacagctggaagaggaacacactgtaatcagaatcacagagtcagaacgtctgtctgaa
caagacaacggagagcagctcttcaacatccaggaggaagagaatgaagatgacccagag
ttacagcccctgcgtgaggagagcgaggaagacagtggggagagtaaaaatgctgaagca
gacattaagaggtgtcttgtggatgtttgcctagttgaggatcttcaaacacataaaact
gagattaaagagcagatgccacaaaaggaggcgtcaccagagccacctcctgcaagtcaa
ccggagatagtacacactccaccactaaagacaactgtccaaccaaagcctgatggagaa
gatcaagcaagagcaaataccccttcacctatagagtcatcatctgttaagagccctcca
cttgtaatgtctccagatgtaatcaatcagcctgaaacggcttcttcaggtccatctcct
ccagctataatacaggaacctaaggagcttaaagaagaatgtggagaatgtccgcacgtg
aatgttgaggaagtagaggatgcatctattcctactgtacctcaaattgttgaaccccag
gagtcaaacgctgttaccctaactgttcctgttcctgtgatggctattcagagcaaagca
gtgcacattgagaaggttctccagacggaagaacaaattgaaggggatgaaatggagaaa
gaggaaactctgacccccaggcgtggcctcctcactgtggaggaagaagactccgagcgt
cctttctcttcagccagtcagacaagtgttgtggtaaatgaacgtctgcaggtgctgatc
aggctgtttaaggaacgaacagaacgagctaaagagaggctgattgaccccgacgagtct
gaagaagagagtccctcagcaacaccttccaaaaaggctgctgctgcccctccacctcca
ccacctcctcccgatgaggagaaaaaagatgttcctgctggtgatgagattgaagaagag
cagttcctggagttcatgggctaccaagtcaaagtgcccaaaatgcctcaaatgccagac
tggctaagagccatcgtggagtatcgtttcccttccagcatcgaccctttcactgatatg
atctatgtggtgtggctgttttttgtgatgtgcgcttggaactataacgtgtggttgatc
ccagttcgttgggcattcccatatcaaacttcagagaacatccacctgtggctgctagct
gattacttatgtgacgccatctacatcctggacattacggtctttcagcctaggcttgag
ttcgtccgtgggggagatatagtgtgtaataaaaaagatatgagggaacattacatgaaa
acagaacgatttaagatggacgtgatcagtctgatgcccctggacatcttgtactttttt
acaggtgttaaatccattctgcgcttcccgcgtcttttaaagtacatggcgttctttgaa
tttaatgatcgtctggaggcggtaatgaaaaaagcctacatttacagagtgatccggacc
agcctgtacctgctctactcgttgcactgcaacgcctgtctattctactggggctctgat
tatgaaggcctcggctctactaaatgggtctatgatggcagaggcaacagttatatccgc
tgctactactttgctgtaaaaactctgatcactatcggaggtcttccagatcccacgaca
gtcttcgaaattgtctttcagctggttaattattttgtgggtgtgttcgctttctcaatt
atgattgggcagatgagagatgtagtaggagcagccactgcaggtccggcgtactacagg
tcatgtgtggacagcacagtgaagtacatgaccgcctatcgcatcccacgtgaggttcag
aacagagtcaagacctggtatgactacacctggcaatcacaaggcatgctggatgaacag
gagttgctcatacagctgcctgataagatgcgtctggacatcgccgtcgatgtgaactac
accattgtcagcaaagtggcccttttccagggttgtgacagacagatgatatttgacatg
ttgaagagtctgaagtctgtggtctacctcccaggagactatgtttgtaagaagggtgag
atcggcagggagatgtacatcattaaagcaggagaggtgcaggtagttggaggccctgac
ggtaaaacagtgtttgtgactttaagggccggatctgtgttcggggaaatcagcttgttg
gctgtaggtggaggaaacaggcgcactgctaatgttgtggcacatggctttgccaacctc
ttcatcctggataagaaggacctctctgagatcatggtgcactaccctgagtcgcaaaaa
atactgcgcaagaaggccaagaagatgctaacaaaggataaaaaacctgaagaagagaaa
gggtcgggtaaggaatctggtcaggtgatctcaacacgtcaagagactcccaaactgttt
aaagccgccctgaaggtgggaaaaggagaagcgttcgctaaattgaaggagacctacaaa
gacactggagccacactacagccttcagacagtacagcggcatccactgcagcagcgcct
gtgcctcctccttcacccattcatcgccgctcacctatccaatgcacggtcacccaggac
gacgccgacgaagacatggttgcacagaccacggacagcacgatgatcatccgcataacc
ccacaccaacatggagaggagatccttagtgtcgaaatggcagaagaagaagatggaaag
gctgagacgactgaccaggaggagaagaaagacaaatag
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