Silurus meridionalis (southern catfish): 124396841
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Entry
124396841 CDS
T08004
Symbol
cacna1aa
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124396841 (cacna1aa)
04020 Calcium signaling pathway
124396841 (cacna1aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124396841 (cacna1aa)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124396841 (cacna1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Chordopox_G3
Motif
Other DBs
NCBI-GeneID:
124396841
NCBI-ProteinID:
XP_046722123
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All DBs
Position
14:23903093..23965079
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AA seq
1524 aa
AA seq
DB search
MARFTDEAPARYGGGGGGSAVAHAHAHGQSGAARGASRQGGPPGAQRVYKQSMAQRARTM
ALYNPIPVRQNCLTVNRSLFIFSEDNFVRKYAKKITEWPPFEYMILATIIANCIVLALEQ
HLPDGDKTPMSERLDDTEPYFIGIFCFESGIKILALGFAFHKGSYLRNGWNVMDFVVVLT
GILSTVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILM
FAIIGLEFYIGKFHTTCFDDITEEIREEFPCGTELPSRLCPNGTTCKKYWLGPNYGITQF
DNILFAVLTVFQCITMEGWTDLLYYSNDASGSAWNWMYFVPLIIIGSFFMLNLVLXVLSG
EFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILADEDNDGDDRMPFDGSR
RRPTLKKTKNDLLNPDEGDGDLALGSPFARASLKSSKLEGSSFRKKERRLRFFIRHVVKT
QAFYWTVLCLVGLNTLCVAVVHYDQPEILSDFLYFAEFIFLGIFMSEMCIKMYGLGTRPY
FHSSFNCFDCIVICGSXFEVLWAMIQPGTSFGISVLRALRLLRIFKVTKYWASLRNLVVS
LLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFETGTPPTNFDTFPAAIMTVFQILT
GEDWNMVMYDGIESQGGVNKGMVFSIFFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKD
EQEEEEAANQKMALQKAKEVAEVSPLSATNLSIAAVTAHSERLSTSEPFLQRKEQQKNHK
GSKSVWEQRTSELRRQTLMTSREALYNELDPEDRWKVSYSRHIRPDMKTHLDRPLVVDPQ
ENRNNNTNKNWPGEELLHKRPPFHSAVRGGGRRGGNASAQTLERGESTESHNSCRKVENP
NNAGTEGTEVGMKDPYRKREHRGQRTGRSCQHRKALDEEAETGGGGRRHRNKGMEGSGEG
EQADGNERRQRCHRHGEKEGRRERGEPGERGRHRRKEGPTLSTTRPIQKTLSRQGSQYSE
DLDNVMNSKLATQPLVPADLYSPSSRSTPHSSLLSLVSSTHGSRLAPMATESSIILTNPG
STTINLIHLDTKMDYTAIDIPPMFPSANAILQVNKNANTEPLPKKEDMKGDDDDDDKDDG
GPKPMPPYSSMFILSTTNPFRRLCHYIVTLRYFEMCILLVIAMSSIALAAEDPVWPESPR
NNVLRYFDYVFTGVFTFEMLIKMVDLGLVLHQGSYFRDLWNILDFIVVSGALVAFAFTGG
GDGEGDGGGSGGSSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNI
LIVYMLFMFIFAVVAVQLFKGKFFYCTDESKEFERDCRGEYLVYERDNDVKAQKREWRKY
EFHYDNVLWALLTLFTVSTGEGWPQVLKHSVDATYENQGPSPGYRMEMSIFYVVYFVVFP
FFFVNIFVALIIITFQEQGDKMMEDYSLEKNERACIDFAINARPLTRHMPQNKQTFQYRM
WEFVVSPPFEYTIMAMIASTPSCS
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggttcacagacgaggcgccggcccggtacggcggaggtggaggtggcagtgcg
gtggcgcatgcgcatgcgcacgggcagagcggcgcggcgcgcggagccagcaggcagggc
ggcccaccaggagcgcagcgcgtgtataagcagtccatggcccagcgcgcgcgcaccatg
gccctgtacaaccccatcccggtgcgacagaactgtctcaccgtcaaccgctccctattc
atcttcagcgaagacaacttcgtgagaaaatacgccaaaaagatcaccgagtggcctcca
tttgagtacatgattctggccaccatcatcgccaactgcatcgttctggcactggagcaa
catctccctgatggagacaagacacccatgtccgagcgcctggatgacacagaaccttat
ttcattggcatcttctgctttgagtctggcattaagattctggctctgggcttcgccttc
cataaaggctcctacctccgaaatggctggaatgtcatggattttgtggtggtgctgact
ggaatcctctccactgttggctcagactttgacctgagaacgttgcgagccgtccgagtg
ctgagacccttaaagctggtgtctggaattcccagcctgcaggtggtgctcaaatccatc
atgaaggccatgatccccctgctgcagattggcctgctgcttttcttcgccatcctcatg
tttgccatcatcggccttgagttctacatcggcaaatttcacaccacctgctttgatgac
atcactgaggaaattcgggaagagtttccatgtggaactgaactcccctcacgtctctgt
ccaaatggaacaacctgtaagaaatactggcttggaccaaactatggaatcacgcagttc
gacaacatcctgtttgctgttcttaccgtgttccagtgcatcactatggaaggctggaca
gatcttctgtactatagtaatgacgcctcaggaagtgcttggaactggatgtactttgtt
cccctcatcatcatcggctcctttttcatgctgaacctggtactgnnagtgctgtctggt
gagtttgctaaagaacgagagcgggtggagaatcgtagtgagttcctgaagctgaggcga
cagcaacagattgagagagaactgaacggatatctggaatggatctgcaaagcagaagaa
gtgattctggctgatgaggacaatgatggtgatgatcggatgccctttgatggatcacgg
agaagaccaacgctgaagaaaaccaagaatgacctgctaaacccggacgagggagacgga
gacctggccttagggtctccgtttgctcgtgcaagcctgaagagctccaagcttgaagga
tcttctttccggaagaaggagaggaggctacgcttctttattcgacatgttgtgaaaaca
caggctttctactggactgttctgtgtttggttggtctgaacacactgtgtgtggctgtg
gttcactacgaccaacctgagattctgtctgactttttatactttgcagagtttatattt
ttggggattttcatgtcggagatgtgtattaagatgtatggactcggaacacggccgtat
tttcactcttcttttaactgcttcgactgcattgtcatttgtggcagtnattttgaggtg
ctctgggcgatgattcagcccgggacatcttttgggattagtgttttacgagctctcagg
ttactaagaatcttcaaagtgaccaagtactgggcctccttgaggaacctggtggtgtct
ctgctgaactccatgaagtccatcatcagcttgctcttcttgctgttcctcttcattgtg
gtctttgctctcctgggcatgcagctgtttggaggacagtttaattttgaaacaggaaca
ccacccacgaacttcgacacgtttcctgcagcaataatgactgtgtttcagattctgact
ggtgaagactggaacatggtgatgtatgatggcatcgagtctcagggaggagtcaacaag
ggcatggtgttctccatcttcttcattgttctcacgctcttcggcaactatacactactg
aatgtgttcttggccatcgctgtagacaatcttgccaacgcacaagagctgaccaaggat
gagcaggaggaagaggaagcagccaatcagaaaatggctcttcagaaggcaaaggaagtg
gcagaagtcagtccgctgtctgccactaacctatccattgcagcggtgacagctcactct
gagcgtctcagcacctctgaaccctttcttcagcgtaaggagcagcagaagaaccacaaa
ggttctaagtctgtgtgggagcagcgaaccagcgagctccggaggcagacactgatgacc
agcagggaggcactgtacaatgagctggacccggaggatcgctggaaggtatcatactcc
cgtcacatccgccctgatatgaaaactcacctggaccgtcctcttgtggtggaccctcaa
gaaaaccgaaacaacaacactaacaaaaactggccaggagaggagcttctacacaaacgg
cctccattccattctgcagtcagaggtgggggaagaagaggaggaaatgcttcagcacag
actttggagagaggagaatctacagagtctcacaatagctgcaggaaagttgagaaccca
aacaatgctggaacagaaggcactgaggtgggcatgaaggatccttaccggaagagagaa
catcgtgggcagaggactggacgctcttgtcaacaccgaaaggctctggatgaagaagct
gagactggtggaggaggcaggaggcaccgaaacaagggcatggagggatcaggggaaggt
gaacaagcagacggaaatgagcgaaggcagaggtgtcaccgacatggagagaaagaaggg
agacgggaaagaggagaaccgggggagagaggtcgacaccgcaggaaggaaggtcccact
ctgtccaccactcgtcccattcagaagactttgtctagacagggtagtcagtacagtgag
gacttggacaatgtgatgaacagtaaacttgctactcagcctctcgttcctgctgacctt
tacagcccaagcagccgctctacaccccactccagcctcctcagcctggtcagcagcacc
catggctctcgtctggctcccatggctacagagagcagcatcattctcactaacccaggc
tccaccactattaacctcattcatctggacaccaagatggactacacagccatagacatt
ccacccatgttcccttctgccaatgcgattctgcaggtcaataaaaatgctaacacagaa
ccgctgcccaaaaaggaggatatgaaaggtgatgatgatgatgatgacaaagatgatgga
ggaccaaaacctatgcctccttacagctctatgtttatcctgtccactactaacccattt
cgtaggttgtgtcactatattgtgaccctgaggtactttgagatgtgcattctgttggtc
attgccatgagcagtattgctcttgctgctgaagaccccgtgtggcccgagtccccccgg
aacaacgttctgcgttattttgactacgtcttcacgggagtgttcaccttcgagatgctg
ataaaaatggtggatcttggtttggtgcttcatcagggttcatacttccgtgacctgtgg
aatattctggactttatagtggtcagtggtgccctggtagcttttgccttcaccggagga
ggtgatggagaaggagacggtggcggcagtggaggaagcagtaaagggaaggacatcagc
accatcaagtccctgcgtgtgttaagagtcttaaggccactgaaaaccatcaaacgctta
cccaagctcaaggctgtgtttgactgtgtggtgaactcactgaagaatgtgctgaacatc
ctgattgtctacatgctcttcatgttcatctttgctgtggtggctgtgcagctctttaag
ggcaaattcttctactgcactgatgagtccaaggaatttgaacgtgactgcaggggtgaa
tatctggtatatgagcgagataatgacgtgaaggcccaaaaacgagaatggaggaaatac
gagtttcactatgacaatgtgctttgggctttgctaactctctttactgtttccacggga
gaaggctggccacaggttctgaaacactctgttgatgcaacatatgagaaccagggcccg
agtcctggataccgcatggagatgtccatcttttatgttgtctactttgtggtcttcccc
ttcttttttgtcaatatatttgttgccctgatcatcattaccttccaggaacaaggggac
aagatgatggaggactacagtttggagaagaatgagagagcctgcatcgactttgccatc
aacgccaggcctttgactcgccacatgccacagaataagcagacgttccaataccgcatg
tgggagtttgtggtgtcgccaccgttcgagtacaccatcatggcaatgatcgcctcaaca
ccatcgtgctcatga
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integrated database retrieval system
