Silurus meridionalis (southern catfish): 124397659
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Entry
124397659 CDS
T08004
Symbol
ncam1a
Name
(RefSeq) neural cell adhesion molecule 1a isoform X1
KO
K06491
neural cell adhesion molecule
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
smeo04514
Cell adhesion molecule (CAM) interaction
smeo04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
124397659 (ncam1a)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
124397659 (ncam1a)
04517 IgSF CAM signaling
124397659 (ncam1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124397659 (ncam1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124397659 (ncam1a)
04090 CD molecules [BR:
smeo04090
]
124397659 (ncam1a)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124397659 (ncam1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
smeo00537
]
124397659 (ncam1a)
04091 Lectins [BR:
smeo04091
]
124397659 (ncam1a)
Membrane trafficking [BR:
smeo04131
]
Exocytosis
Tethering complex
Exocyst complex assembly proteins
124397659 (ncam1a)
Cell adhesion molecules [BR:
smeo04515
]
Immunoglobulin superfamily
NCAM1/2
124397659 (ncam1a)
CD molecules [BR:
smeo04090
]
Proteins
124397659 (ncam1a)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
124397659 (ncam1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
smeo00537
]
Others
124397659 (ncam1a)
Lectins [BR:
smeo04091
]
I-type lectins (Siglecs)
124397659 (ncam1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_PDGFR_d4
Ig_5
C2-set_2
V-set_CD47
Pur_ac_phosph_N
C2-set_3
Motif
Other DBs
NCBI-GeneID:
124397659
NCBI-ProteinID:
XP_046723234
LinkDB
All DBs
Position
15:complement(15532329..15790871)
Genome browser
AA seq
1017 aa
AA seq
DB search
MLKTRDLIWTVLLFGHAVSLQVEIVPPHGEISVGESKFFLCEVVGDVKDIDWFAPSGEKL
LPTRQDISVSRNDETSSTLTIYSATVDNAGIYKCVVKNGDKEAEATVNVKIFQKLTFQNA
PSPQEFNEGDDAIIVCDVISSPPPTIIWKYQRTKIQPEKDVRFKLLSNNHLQIRGIKKSD
EGDYTCEGRIMARGEIDLRVIKVIVNVLPSIRTRNAELNATADIEQAVTLACYADGYPEP
TVTWTHNNILLLDNEKYGLNDDGSELTIKDVKKLDEGDYTCVAHNKAGEKQEDISLKVFV
QPKITYLKNQTASELEEQTVLTCEATGDPTPSIVWSFGRRIFSEGEQASWTRPEKHKSLD
SNVIVRSDARVSSLTLKYVQFTDAGQYLCTARNSIGQDIQSMYLEVRYAPKVHGQVTKFT
WDGNAANLTCEALAHPSATVQWFRDGLQLPAVNTTNVKIYNTPSASHLEVTPESQTDFGS
YNCTATNAIGSDSKEFLLISADVPSAPVIEHIEPYPSTAMVEFDEPASEGGVPILKYKAQ
WRTKGQDWVSKIYIVEEGHSAITIVGLKPETEYEVIMSAINGKGEGESCPPETFKTLPVT
YTLTMSSVAPTTYPTTTAALKGEPNPPKLNAQLQSPGNELKVNWIKQDDGGSPIKQYLVS
FRPKNQNNWKPVIRVPNGSEFLVLRGLDWNTDYEISVVAENQQGRSKPGILFFRTSAEPT
AIPDPVASGSNLGTGAIVGILIVVFLLLLVGVDVTCYFLNKCGLLMCIAVNFCGKSGPTA
KGKDIEEGKAAFTKDESKEPIVEVRTEEERTPNHEGGIPTEPNETTPLTDPEHAADSTAT
VVDLLPSLATNSEPVTDSPASESTTINSSTAPEPDPKTTPSSQSNAPKANITSPTYPPAD
TPLVDLSDGPSPQASQPSVAPKSTPSSPQPKNATDGIQNTDSATVSQVDGGIHHASDADL
ANDSNSTSAPAVPSQDDGKIVEDMKSKAPETEVKKPSAEVKTIPNEAPQTNGNESKA
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaacacgggatctcatctggaccgtgctgctttttggacatgcagtctcgctg
caggtggagattgtgccaccccatggagaaatcagcgtcggagaatccaagttcttttta
tgtgaagtggtcggtgatgtgaaggacatcgactggtttgctcccagcggagagaagcta
ctgccaactagacaggacatcagcgtgagtcgtaatgatgagacctcgtccacactcact
atctacagtgctaccgtggacaacgctggcatatacaagtgtgtcgtcaaaaacggggac
aaggaagccgaggccactgtcaacgtcaagatctttcaaaaactgactttccagaacgct
ccatctcctcaggagtttaacgagggggacgatgccatcattgtttgtgatgtcatcagc
tctccaccacccacaattatctggaagtaccagagaaccaagattcagccagaaaaagac
gtgcgcttcaagctcctgagcaacaaccacctccagatccgaggcatcaaaaaatccgat
gaaggcgactacacctgcgaggggcgcattatggctcggggagagatcgacctcagggtc
atcaaggtcatcgtcaatgtcctgcccagtattaggactcgcaatgcagagctcaatgcc
actgcggacatcgagcaggctgtgactctggcatgttatgcagatggctatccagagccc
acagtcacgtggacgcacaataatatactgctcctggacaacgagaaatacggcctgaat
gatgacggctctgagctgacaatcaaagatgtgaagaagctggacgagggagattacacc
tgtgtcgcccacaataaagcaggagagaagcaggaggacatcagcctcaaggtgtttgtg
caaccaaaaatcacatacctgaaaaaccagacagcctcagagctagaggaacagaccgtc
ctgacctgcgaggccactggtgaccccacacccagcatcgtgtggagctttggcaggcga
atcttcagcgagggagagcaggcttcttggactcgacctgagaaacacaagagtctggat
agtaatgtgatcgtgcgcagtgatgcccgtgtgtcctctctcaccttgaagtacgtccag
ttcacagacgccggccagtatctctgcaccgcacgaaactccatcggccaggacatccag
agcatgtacttggaagtgcgctatgctccaaaagtccatggccaagtgaccaagtttact
tgggatggcaatgcggctaatcttacatgtgaggctctggctcatccgagtgcaacagtg
cagtggtttcgcgatggactgcagctgccagcagtgaacaccaccaacgtcaagatctac
aacacacccagtgccagccacctggaggtgacccctgagtcccagactgacttcgggagc
tacaactgcacagccaccaatgcaatcggcagtgactctaaggagttccttttaatctcg
gcagacgtgccatcggctccagttattgagcatatagagccgtaccccagcacagccatg
gtggagtttgatgagccggcttcagaaggaggcgttcctattctcaagtacaaggcccag
tggaggacaaagggtcaagactgggttagcaaaatatacattgtggaggaaggccacagt
gccatcaccattgttgggcttaagccagagactgaatacgaggtcataatgtctgccatc
aacggcaagggtgaaggagaaagctgtcccccagagacctttaaaacacttcctgtcacc
tatactttgacaatgtcttcagtggctccaaccacatatcctacaaccactgcagccctt
aaaggggaaccaaatcctccaaaactaaatgcccagctgcaatccccaggcaatgagctg
aaggtcaactggatcaagcaggatgatgggggctcacccatcaaacaatacctagtgagc
tttagacctaaaaaccaaaacaactggaagcctgtaatccgtgtccccaatggtagtgag
tttttggtgctcagaggtttggattggaacacagattacgagatctctgtggtagcagag
aaccagcagggccgctcaaagcctggcatcctcttcttcaggacttctgcagaacctacc
gccattccagacccagtggccagtggttcaaatcttggtacaggagccatcgtgggcatt
ctcattgtggttttcctgctgcttctcgtcggtgtggatgtcacctgctacttcctcaac
aaatgtggcctgctcatgtgcatcgctgtcaacttctgtggcaagtcaggccccaccgcc
aagggcaaggacatcgaagagggcaaggcagctttcacgaaagatgagtctaaagagcca
atagtggaggtgaggactgaggaggagcgcactcccaatcacgagggaggaattcctact
gaacccaatgagaccaccccacttaccgaccctgagcatgccgctgattccactgccaca
gtagtggacttgctcccctctttagccactaactcagagccagtcactgacagtcccgct
agtgagagcacaaccatcaactccagcactgcccctgaacccgaccccaaaacaacaccc
tcttctcagtctaatgcccccaaagccaacataacctctcctacctacccacctgctgac
accccactggttgacctcagcgatggtccctccccccaggcttctcagccctcagttgcc
cccaaatccactccttcttcaccccagcctaaaaatgctacagatggcatccaaaataca
gattcagcaacagtttcgcaggtagatggaggaatccaccacgcatcagatgctgatctg
gccaatgactccaactccaccagtgcaccagctgttcccagccaggacgacgggaagatt
gtcgaagacatgaagagcaaagcacccgagacggaggtgaagaagccctcagctgaggtg
aagacgatccctaacgaagccccgcagacaaacggcaacgagagcaaagcgtga
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