KEGG   Silurus meridionalis (southern catfish): 124399581
Entry
124399581         CDS       T08004                                 
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124399581 (sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smeo03041]
    124399581 (sf3a1)
Spliceosome [BR:smeo03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    124399581 (sf3a1)
 Complex B
    124399581 (sf3a1)
 Complex C
   U2 SnRNP specific factors
    124399581 (sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 124399581
NCBI-ProteinID: XP_046726556
LinkDB
Position
17:complement(1056566..1078162)
AA seq 786 aa
MPPVQISQAEANIKADEQKEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEARI
RQNEINNPKFNFLNPSDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQSMQQAQQQLPQ
KVQAQVIQETIVPKEPPPEFEFMADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNFQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLQKLKREAENPREVLEQVRYRVEWA
KYQERERKKEEEERERERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILI
QERYEKYGESEEVEMEVESEDEEDERAPRNEGHSAQPDQDTQLQDMDEGSDDEDESMKAP
LPPENPMPPPLPPTPDQVIIRKDYDPKASKSQAIIPPGDEFLISPITGEKIPASKMQEHM
RIGLLDPRWLEQRDRNLRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKDKIGPSK
PNENMPMSLSNTMPTLSKPSPPINTAPRMPPAVPPPVRTTLLSAVPVLQRPPMAPVVRLA
PGQVLTPMPPMVHASRINVVQMPPAAPHIMAPRPPPMVVPAAFVPAPPVPQPPSTAPAPM
PPAHPPVPHEDEPVTKKMKTEDNLIPEDEFLRRNKGPVAVKVQVPNMQDKTEWKLSGQML
NFTLPLTDQVSVIKVKIHEATGMPAGKQKLQFEGIFIKDSNSLAYYNMNNGSVIHLALKE
RGGRKK
NT seq 2361 nt   +upstreamnt  +downstreamnt
atgccgccggtgcagatctctcaggcggaggcgaacatcaaggccgatgagcagaaagag
gaaactccggccacgaaacccatcgtggggatcatttaccctcctcctgaagtgcgcaac
atcgtggacaagaccgccagcttcgtagcgagaaacggtcccgagtttgaagcgaggatt
cgtcagaacgagatcaacaaccccaagtttaatttcctgaaccccagcgacccgtaccat
gcctactaccgacacaaggtcaacgagttcaaagagggcaaaggtcaggagccgtcggcc
gccgtgcctaaggtcatgcagcagcagtccatgcagcaggcgcagcagcagctcccgcag
aaggtccaggcgcaggtcatccaagagaccatcgttcccaaggagcccccgcccgagttt
gagttcatggccgacccaccctccatctcggccttcgacctggacgtggtgaagctgacg
gctcagttcgtggctcgtaacggccgccagttcctcacgcagctcatgcagaaggagcag
aggaacttccagttcgacttcctgcgtcctcaacacagtctcttcaactacttcaccaaa
ctggtggaacagtacaccaaaattctgatccccccgaaaggcctcctgcagaaactgaag
agagaagcagagaatcctcgcgaagtccttgagcaggtgagatatcgagtggagtgggca
aagtaccaggagcgagagaggaagaaggaggaggaggagagagagagagagcgagtggcg
tacgctcagatcgactggcacgacttcgtggttgtggagacggtcgactttcagcccaac
gaacaaggaaacttccctcctcccaccactccggaggaactcggagctcgaatcctgatc
caggagcgctatgagaagtatggagaaagcgaggaggtggagatggaggtggagagcgag
gacgaggaggacgagcgtgcaccccggaacgaaggacactctgctcagccggatcaggac
acacagctgcaggacatggacgagggttcggatgacgaggacgagtcgatgaaggctcca
cttcctcctgaaaaccccatgcctcctcctctgcctcctactccagaccaggttatcatt
cgcaaagactatgaccccaaggcttctaagtctcaggccatcattcctcctggtgatgag
ttcctcatctctcccattacgggcgagaagatcccagccagtaagatgcaggagcacatg
cgtatcgggttgctggacccgcgctggctggagcagcgagaccgcaacctccgagagcga
cagatcgaagaggaggtgtacgctcccggcctggacatcgagagcagcctgaagcagctg
gctgagagaagaaccgatatcttcggtgtggaggaaactgccatcggtaagaagatcgga
gaggaggagatccagaagcctgaggagaaggtgacctgggacggtcactcaggcagcatg
gcacgcacgcagcaggccgctcaggccaacatcacgctgcaggagcagatcgaagccatc
cacaaagccaagggtctggtgcaggaagatgagagcaaggacaagatcggacccagcaaa
cccaacgagaatatgcccatgtccctgtccaacaccatgcccaccctatccaaacccagc
ccgcccatcaacacagctcccagaatgccacctgcagttcctcccccagtgcgcaccacc
ctgctctccgctgtgcccgttctccagaggccccccatggccccagtggtacgcttggct
cccggtcaggtcttgaccccgatgccccccatggtccacgcttctcgtatcaacgtggtc
cagatgcccccagctgctccccacatcatggctcctcgccctcccccgatggtggtgcct
gcagcgttcgtacctgcccctccggtgccccagccacccagtactgccccggcccctatg
ccccctgcccaccctcctgtcccgcacgaagacgagccggtgaccaagaagatgaagacg
gaggacaacctgatcccagaagacgagttcctgcgcaggaacaagggtcctgtggcggtg
aaggttcaggttcccaacatgcaggacaagaccgaatggaagctgagcggacaaatgctg
aacttcacactgccgctcacagaccaggtgtctgtaataaaggtgaagatccacgaggcc
acagggatgccagccggcaagcagaaacttcagttcgaggggatttttatcaaggactcc
aactctctggcgtactacaacatgaacaacggctctgtaattcacctggcactgaaggag
agaggagggaggaagaaatga

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