KEGG   Silurus meridionalis (southern catfish): 124399872
Entry
124399872         CDS       T08004                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
smeo  Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:smeo01009]
    124399872 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:smeo03036]
    124399872 (kdm5bb)
Enzymes [BR:smeo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     124399872 (kdm5bb)
Protein phosphatases and associated proteins [BR:smeo01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     124399872 (kdm5bb)
Chromosome and associated proteins [BR:smeo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    124399872 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID PHD zf-C5HC2 JmjN PHD_5
Other DBs
NCBI-GeneID: 124399872
NCBI-ProteinID: XP_046727103
LinkDB
Position
17:complement(19984668..20006757)
AA seq 1546 aa
MSQPRPDEFKPPPECPVFEPSWEEFADPFAFINKIRPIAEKTGICKIRPPPDWQPPFACD
VDRLHFTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLYQLNKLV
SDEGGFDIVCKERKWTKIAISMGFAPGKAIGSHLRAHYERVLYPYNLFLSGANLLESELA
AKLMSFGAAPEQEKQFVQKPSLPENDDDKEYKPHDLVQRQKVQVQPSDTCTPARRAKRMK
AESGSGKSEGGAGGEVCENRPNLRRRMGSFVAKPEPVKEIPIQIKQEPVERDLQTEPEKT
KPRYKKSAPQAPVSVVDLYVCLVCGSGSDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDW
RCPKCLAQRQIATKLWHSCIMNKKIGLLSVSLQECSKPLQAFGFEQARREYSLKTFGEMA
DSFKSDYFNMPVHMVPTELVEKEFWRLVGTITEDVTVEYGADIASKEFGSGFPIKGGKFK
VAPQDEKYLSCGWNLNNMAMMDPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSY
SINYLHWGEPKTWYGAPGFAAEQLEAVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHGV
PIYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWMPLGRQCVEHYRLLHRYCV
FSHDEMICNMAAKAEKLSVVLASAVHKDLVLMINEERDLREQIRKLGVVQCELFKYDLLQ
DDERQCVNCRTTCYLSALTCPCRPGEQVCLHHALHLCSCPTSKYTFKYRFTLDDLYPMMN
AVRQRAYLYDEWASRVTEVLEAKLDKKRNLSMFHSLIEESDKNSFPDNDLLRHLRVVTQD
ADRCSSVAQQLLNGKRQTRYRAGGGKTHNQLNVEELRSFVRQLYNLPCSLMQAPLLKDLL
NRIEDFQAHSEKVLSDAVSAESVVEIQALLDESAEFDVHLPEVPRLRERLEIARWLASVY
QAEESGSSVRGLTLDAMRQLIDRAVGLTSDPAIERAMARLQELLTLSEQWEDKAQALLKA
RSPESVESLSAILKEVEAVPTYLPNCRLLRDSIDRATEWLKEAEALQLGGRVPVLDTLSD
LVQRARAIPVQLEPLERLEALVSEVQAWKESAAKTFLLKHSSFTLLEVLCPRCEVGSPFK
RKMKKTKGDAVSCGKKRTGRLDNLSDVEKALTESKDSTSAMATLAEVHLKELESLVSLRA
ANESKLLQAADCSTLKVCVCQKPPMGAMRQCELCRGVFHSVCVRGQGDPCESESWLCPLC
RRSAKPALDRIVQLMASLQRIRVRLPEGDALRYMIELTVDWQRRAREVIASHNLPTQEQQ
EKRLAGDNSPKGQDWSKCSQEQSVFYIEQHCIPLQGLTPELEKLLVEGLLLQVSLPETQQ
LYTLLLKGPLAQCSPRHTQPASDSPQHTPYHSQEHTSQHKEKDQGTPAEKKAKRRLEREE
MGMKVDVRERGVPKRKKQRMRKENRSERKAASVSASPSYLSDVSQSDDSEEDMILCPAES
CLQPAGEEVFWVQCDCCNQWFHMICVGVSEKIAADEDYMCVTCSAR
NT seq 4641 nt   +upstreamnt  +downstreamnt
atgagccagcctcggccggacgagtttaagccgcctccggagtgcccggtcttcgagccc
agctgggaggaattcgccgatccgttcgcgtttattaataagattcgtccaatcgcggag
aaaacgggcatctgtaaaatccgaccgccgccggactggcaacctccatttgcatgtgac
gttgacagacttcattttactcctcggatccaaagactcaacgaattagaggcacaaacg
agggtcaaactaaattttttggaccagattgctaagttctgggagcttcagggatgcact
cttaagattccacatgtagagcgaaagatattagatctataccagctaaacaagctggtt
tcagatgaaggtggtttcgatatcgtatgtaaggagcgcaaatggacaaagattgccata
tccatgggatttgcgcccggcaaggcgataggttcacatctgcgtgctcactacgaacga
gtcctctacccttacaacctcttcctttctggggccaatttgctggaatcagagcttgca
gccaaactgatgagttttggggcagctcctgagcaggagaagcagtttgttcagaagccc
tccctcccggaaaatgatgatgataaagaatataaacctcacgatctggtgcagaggcag
aaggtgcaggtgcagcccagcgatacatgcacgcctgccaggagagccaagcggatgaaa
gccgagtctggcagtgggaagtcggaggggggtgcaggaggagaggtgtgtgagaacagg
cccaatctcaggagacggatgggctcttttgtagcaaaacctgaaccagtaaaggaaata
cccattcagattaagcaggagcctgtggagcgagacctgcaaactgagccagagaaaacc
aaaccgcgctataagaaaagcgctccacaagcacctgtcagtgtagtggacctgtatgtg
tgtttggtatgtgggagtggtagtgatgaggataggctgttgctatgcgacggctgtgat
gacagctaccacactttctgcttgatcccacctcttcatgatgttcccaagggtgactgg
aggtgccccaagtgtctggcgcagaggcagattgccaccaaattatggcattcatgtatt
atgaataaaaaaattgggttattgtctgtttctctgcaggaatgcagtaagccactgcag
gcatttggcttcgagcaggcgcgcagagaatactccctcaaaacatttggggaaatggct
gactcttttaagtctgactacttcaacatgcctgttcatatggtgcccactgagctggtt
gagaaagagttctggcggttggtgggcactatcacagaggatgtgaccgtagagtatgga
gccgatatcgcttccaaggagttcggcagcggctttccgattaagggtggcaagttcaag
gtcgcccctcaagacgagaagtacttgagctgtgggtggaatctgaataacatggcaatg
atggatccatctgtgttgacccatgtgacagctgatatttgtggcatgaccctgccctgg
ctgtatgtgggcatgtgtttttcttctttctgctggcatatcgaggaccactggagctac
tccattaactacctgcactggggagagcctaagacatggtatggagctccaggatttgct
gctgagcagctggaggcagtgatgaagaagctggcacctgagctttttgagtctcagcca
gatcttctacaccagcttgttaccatcatgaacccaaacacactcatggcccatggagta
ccaatttacaggaccaatcagtgtgcaggagaatttgtcatcacattcccaagagcctat
cacagtggctttaatcagggcttcaactttgcagaagctgtgaacttctgcactgtggac
tggatgcctttgggccgtcagtgtgtggaacactaccgcttgctgcatcgctactgtgtg
ttttcacacgatgagatgatatgtaacatggctgccaaagctgaaaaattgagcgtggtc
ctagcttcagccgtacacaaagacctggtgctaatgatcaacgaagagagggacctccga
gagcaaatccgcaaattgggagtggtgcagtgcgagctgtttaaatatgatttgctgcag
gatgatgagagacagtgtgttaattgtcgtaccacctgttacctgtctgctctcacctgt
ccatgtcggccaggagagcaggtgtgtctacaccatgctctccacctctgctcctgtcct
acctccaaatacacattcaagtatcgattcacattggatgacctctaccccatgatgaac
gcagtgaggcaaagggcttatttgtatgacgagtgggcatcacgcgtaactgaggtcctt
gaggccaaactggacaaaaagcgcaacttatctatgttccattctctgattgaggagtcc
gataagaacagttttccagataatgatttgttacgtcaccttagagtggtcactcaagat
gcagacagatgttcatctgtggcacagcagctactcaatggcaagagacagaccaggtat
cgtgctggtggaggaaaaactcataaccagttaaatgtcgaggaactgaggtcatttgtg
cgtcagctctacaacctgccctgcagcttaatgcaagcaccattactgaaggatctgctg
aaccgtatcgaggatttccaggcacacagcgagaaagttctgtctgatgctgtgagtgca
gaatctgtggtggagattcaggctcttctggatgagagcgcggagtttgacgtgcatctg
ccggaggttccgaggttacgggaacgtctggagatcgctcgctggttggcatcagtgtat
caggctgaggagtcaggcagcagtgtccgtggcctcactctggacgctatgcggcagctg
attgaccgcgctgtggggttaacttctgaccctgcgatagagcgtgccatggctcgtctg
caggagctgctcaccttgtctgagcagtgggaggacaaagcacaagcactgcttaaagcc
agatctccagagagtgtggaatcgctttctgccattctgaaagaggttgaggccgtgcct
acgtatctgcccaattgtcggttgttgcgagactctattgatagagcaacggagtggctg
aaggaggctgaagctctgcagttgggagggcgtgtccctgtgttagacacactgtcggac
ttggtgcagagggccagggcaattcctgtgcagctggaaccactggaaaggttggaggcg
ctcgtctctgaggtgcaggcatggaaggagtccgcagccaaaacctttctccttaaacac
tcctctttcacgctgctggaggtgttgtgtccacggtgtgaggtgggaagtcctttcaaa
agaaagatgaagaagacaaagggagatgcagtgtcatgtgggaaaaagagaacagggaga
ctggataatctgagtgatgttgaaaaagccctgacagaaagtaaagactcgacttctgct
atggctactcttgctgaagtccatttgaaggagctagagtccttggtgtctctccgtgca
gctaacgagtcaaaactccttcaggcagccgactgcagcacactcaaagtttgcgtgtgt
caaaagcctcccatgggggccatgcgtcagtgcgagctgtgtcgaggtgttttccacagt
gtgtgtgtacgtgggcagggggacccttgcgagtccgagtcgtggttgtgtcctttgtgt
cggcgttcggcgaaaccggctttagacaggattgttcagctgatggcgtctctgcagaga
atccgtgtgcggttaccagagggagacgcactgcgttacatgattgaactcacagtggac
tggcagcggcgagcacgggaggtcatagcctcgcataaccttcctacacaggagcagcag
gaaaaacgcttggcaggggacaacagtccaaagggtcaggactggagcaagtgcagtcag
gaacagtctgtcttttacatagaacagcactgcatccctctgcagggtctgactccagag
ctggaaaagctgttggtggaaggattattgcttcaggtgtcactgcctgagactcaacag
ctgtacacgttgctactaaaaggccccctggctcagtgcagtcctaggcatacacaacca
gcatccgacagcccacagcacacaccataccactctcaggaacacacttcacaacacaag
gagaaggaccaagggacaccagcagaaaagaaagcgaagcggcggttggaaagagaggag
atgggaatgaaggtcgacgtacgagagcgaggggttccgaaaaggaagaagcagcggatg
agaaaggaaaataggagcgagaggaaagcagcgtcggtgtcggcatctccctcttacctt
tctgatgtgtcccagtctgatgactcagaggaggacatgatcctctgcccagctgagagc
tgccttcagccagcaggagaagaggtgttctgggtgcagtgcgactgctgtaaccagtgg
tttcacatgatctgtgtaggagtttctgaaaagatagcagccgacgaggactacatgtgc
gtcacctgcagcgcacgttaa

DBGET integrated database retrieval system