Silurus meridionalis (southern catfish): 124401221
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Entry
124401221 CDS
T08004
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04010
MAPK signaling pathway
smeo04020
Calcium signaling pathway
smeo04260
Cardiac muscle contraction
smeo04261
Adrenergic signaling in cardiomyocytes
smeo04270
Vascular smooth muscle contraction
smeo04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124401221 (cacna1c)
04020 Calcium signaling pathway
124401221 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
124401221 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
124401221 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
124401221 (cacna1c)
04270 Vascular smooth muscle contraction
124401221 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124401221 (cacna1c)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124401221 (cacna1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
124401221
NCBI-ProteinID:
XP_046729273
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Position
18:complement(19934208..20017509)
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AA seq
2014 aa
AA seq
DB search
MFLPEETLENHQGSNYTSPSLVMVSNVSEQEHSVSVSKGGMVGLAPEHIPTPNAALSWQA
AIDAARQAKLIRSAAAPISTASSTQQQRQHYCKPKKPTSTVATRPPHSLLCLTLKNPLRR
ACINIVEWKPFEIIILMTIFANCVALAVYIPFPEDDSNATNSNLEQVEYLFLIIFTVEAF
LKVIAYGLLCHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKGDGGTPIGGKAAGFDVKA
LRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMH
RACFFFRNGHKGPIAEEKPAPCAPNNAHGRHCTPPNITQCMMGWEGPNDGITNFDNFAFA
MLTVFQCITMEGWTDVLYWVNDAVGNSWPWLYFVTLIIIGSFFVLNLVLGVLSGEFSKER
EKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENDEGLDDAKPRNLSIPASENES
VNTEIPPAGDLEGEPCCTQLVNRISKSKFSRYSRRWNRLCRRKCRAAVKSNVFYWLVIFF
VFLNTLTIASEHHKQPQWLTDVQDIANKVLLALFTGEMLLKMYSLGLQAYFVSLFNRFDG
FVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIAS
LLLLLFLFIIIFSLLGMQLFGGKFNFDDTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDG
IMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKER
RKQARLASPDKWQGNEKPPAEKKEEKIELKSITSNEETTNTTKINIDEKEENPYPANDFP
GEDDEEEPDMPVGPRPRPLSDIHLKEKAVPMPEARAFFIFSHTNKFRVFCHKIVNHNIFT
NLILFFILLSSISLAAEDPVKSDSFRNQILGYADHVFTGLFTIEIILKMTAYGAFLHRGS
FCRNYFNILDLVVVSVSLISSGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVF
VAIRTIGNIVIVTTLLQFMFACIGVQLFKGKFYTCTDSSKQSETECRGTYILYKDNNVGK
PERSRRAWDNSDFNFDNVLQGMMALFAVSTFEGWPSLLYKAIDSHAEDAGPIYNYRVVIS
VFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYI
PKNPYQYKVWYVVNSTYFEYLMFTLILLNTICLAMQHHGQSPSFNKAMNILNMLFTGLFT
VEMILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDVILSEINNTEDNARISITFFRLFRVM
RLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALRDNTQIN
RNNNFQTFPQAVLLLFRCATGEAWQEIMLACYTNRPCEKGSEEAPHSEECGSPFAIIYFV
SFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDV
VTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGN
LEQANEELRAIVKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQ
GLVAKVPPKTALSLQAGLRTLHEMGPEIRRAISGDLTAEEELEKAMKETVCAASEDDLFR
VKRSDGFFRNHMNYYHQSDDCTDFPPSFTTQRPLHISKSGSPGEGKSPSREKLVDSTFTP
SSYSSSGSNANINNANNTSISHCYPSISTVDGHTRSLLIPVLLPCSSWSFPNKSSDSGEC
YFPVISRGEAAKDQMHDQMLTETECQHEQDMLSPKMLVLQNDECKQLAVMEQTDGGEDRR
PWTFPQQTVLSPTALSQRSSIHLECLSRQSRNETSHKTALPLHLVQHQVLMSEQLDHYSQ
DSSFVNVAEQELAATHDMTMEVMENVSESIVNGPRSPNSNLLPYMHCSNGVGTNQEQKRA
WERKVPEGEPQVSEHGHLNSKLLIDEDMEGVTSL
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atgtttctcccagaggaaaccctggaaaaccatcaaggttctaactacaccagcccatct
ctggttatggtgtccaatgtaagtgagcaggagcacagtgttagtgttagcaaaggtggc
atggtaggtctggcaccagaacacatcccaacgcctaatgccgccctcagctggcaggca
gctatcgatgcagcacgtcaggccaagctgatccggagtgcagcagcacccatctccaca
gcaagttctacacagcaacagcgtcagcactactgcaaacccaagaaaccgacgagcaca
gtggccacacggcccccacactccctcctctgccttaccctcaaaaaccccctcagacga
gcctgcatcaacattgtggagtggaaaccatttgaaatcatcattttaatgactatattt
gctaattgtgttgccttagcggtctacatccccttccctgaggatgactccaatgccacc
aactccaatctggagcaagtggaatatctcttccttatcattttcacagtggaagcattt
ctgaaggtcattgcatatgggctgctctgtcaccccaatgcttatttaagaaacggctgg
aatctgctggatttcataattgtggttgtagggttgttcagtgctatattagaacaggcc
actaagggagatggagggacacctatcggagggaaggcagcaggatttgatgtaaaggcc
ctgcgtgctttcagagtactgagacccttacgattagtgtctggtgttcctagtttacaa
gtcgtgttgaactccatcattaaggccatggttcctctgctgcacatcgctctgctcgtg
ctcttcgtgatcatcatctacgccatcattggcctggagctgttcatggggaagatgcac
cgtgcatgctttttcttcagaaatggtcacaaagggcctatagctgaggagaaacctgca
ccctgtgccccaaacaatgcccatgggcgccactgcacaccacccaacatcacccagtgc
atgatgggatgggagggaccaaatgatggcattacaaactttgataactttgcatttgcc
atgctgacagtgtttcagtgcatcaccatggagggctggaccgacgtcctctactgggtg
aatgatgctgtagggaactcctggccatggctttattttgttactctaatcatcattggc
tctttttttgttcttaacttggttctgggggtcctgagcggagagttctctaaggaacgt
gaaaaggcgaaggcacgaggagatttccagaagttacgagaaaagcaacagctggaagag
gatctaaagggctacctggattggatcactcaggctgaggacatcgacccagagaacgac
gaaggactggatgatgccaaaccacgaaacttgagcattccagcgagtgagaacgagtcc
gtgaacaccgaaatccctcctgctggagatttagagggagaaccgtgctgtacccagctg
gtaaataggatctccaaatccaagttcagtcgatattctcgtcgctggaatcgtctgtgt
cggcgtaaatgtcgagctgctgtgaagtccaatgtgttttattggctggtgatttttttt
gtgttcctgaacactctaaccatcgcctcggaacaccacaagcagccgcagtggctgact
gatgtacaagatatcgccaacaaagttctcctggctctcttcactggagaaatgcttctg
aagatgtacagtttgggactgcaggcgtatttcgtctcactttttaatcgttttgatggt
tttgtggtgtgtggtggaatactggagaccatcctggtggagacgaagatcatgtcccct
ctgggcatctccgtgctgcgttgtgtccgtctgctgcgcatcttcaaaatcaccaggtac
tggaactccctcagcaacctggtagcgtctctgctgaactccgtgcgctccatcgcctcc
ctgctgctcctcctcttcctcttcatcattatttttagtttgcttggaatgcaactgttc
ggtgggaagttcaacttcgatgacacgcgtcgcagcacctttgacaacttcccccagtca
ttactcacagtcttccagattttgactggagaggactggaactcagtaatgtatgatggg
attatggcgtacggtggaccttcgtttcctggcatgcttgtgtgcatctacttcatcatt
ctctttatttgtggaaactacatcctcttgaacgtcttcctggccatcgctgtagataat
cttgcagatgcagagagtctgacctcagctcagaaagaggaagaagaagagaaggagagg
cggaagcaggccaggttggccagtcctgacaagtggcaaggaaacgagaaacctccagct
gagaaaaaagaggagaagattgaactgaaatccattacctcaaatgaagaaactacaaat
accaccaagattaatattgatgaaaaagaagagaatccatatccagcgaacgacttccca
ggtgaggatgatgaggaggagccagacatgccagtgggtccgaggccaagacctctttca
gacatccatctgaaggagaaagctgttcctatgcctgaagctcgagccttcttcatcttc
agtcatacaaacaagtttcgagttttttgccataagattgtcaaccataacatcttcacc
aatctgatcctcttcttcatcctgcttagtagtatttctctggctgcagaagatccagtg
aaaagtgactcattcaggaatcagattctgggttatgcggatcatgtttttacgggtctc
ttcaccatagagatcatattaaagatgactgcgtacggagcgttccttcatagaggttcc
ttctgtcgtaactacttcaacattctggatctggtggtggtcagtgtctctctcatctcc
tctgggattcagtccagtgccatcaatgtggtaaagattttgagagttcttcgagtcctc
agacccctgagagccattaacagagccaagggtctaaagcatgtagtccagtgtgtattc
gtagcgatccgcaccatcgggaacattgttattgtcaccactctgctgcagtttatgttt
gcgtgcattggagtgcaactctttaagggcaagttctacacttgcacagactcttctaaa
caaagcgagacagagtgcagagggacttatattctgtacaaagacaataatgttggaaag
ccagaacgatctcgtcgtgcttgggacaacagtgacttcaattttgataatgttctgcaa
ggcatgatggccttgtttgctgtgtccacttttgaaggatggcctagccttctgtacaaa
gcgatagactcccatgctgaagatgccggtcccatctacaactaccgtgtggtcatctct
gtcttctttatcatctatatcatcatcatcgccttcttcatgatgaacatctttgtcggt
tttgtcattgttacattccaggagcaaggagagcaggagtacaagaactgtgagctggac
aagaaccagcggcagtgtgtggagtatgctctaaaagcacggcctctacgcaggtacatt
ccaaagaatccataccagtataaggtgtggtatgtagtcaactccacctactttgagtat
ttgatgttcactctaatcctcctgaacaccatctgcttggcgatgcagcaccatggacag
tcaccatccttcaacaaagccatgaacatcctcaacatgctcttcactggtctgttcact
gtggagatgatcctcaaacttattgccttcaaacccaggggatattttagtgatccttgg
aatgtctttgacttcctcatcgtaattggcagcattatagacgtcattctgagtgaaata
aacaatacagaagataatgccaggatttccattaccttcttccgactgtttcgagtgatg
agactggtgaagctgctttcacgtggagaaggaattcgcaccctgctgtggaccttcatc
aaatctttccaggcacttccttatgtagcattgctgatagtgatgcttttcttcatctat
gctgtgattggaatgcagatgtttggtaagatcgcactgagggacaacacccagatcaat
cgaaacaacaattttcaaacgttccctcaagctgttctgctgcttttcagatgtgcaaca
ggtgaggcgtggcaggagataatgctggcctgttatactaatcgtccgtgcgaaaaggga
tctgaggaggctcctcacagtgaggagtgtggtagtccttttgccatcatttactttgtc
agtttctacatgctctgtgccttcctgattatcaacctgtttgtggctgttattatggac
aattttgactatctgacacgagattggtccatactcggaccacatcatcttgatgagttt
aagaggatctgggcagaatatgaccccgaagcaaaggggcgaattaaacatctggatgtg
gtgacattattgagaaggattcagccacccctgggctttggcaaactctgtccccacaga
gtggcctgcaagcgcctggtgtctatgaacatgcccctgaacagtgatggtacagtgatg
tttaacgccaccctgtttgccctggtgcgcacagcacttcgcattaaaactgaagggaat
ctggagcaggcaaatgaagaactgagggcaattgtgaagaagatctggaagaggaccagc
atgaagttgttggaccaggttgttcctccagcaggagatgatgaggtgacagtcgggaaa
ttctatgccacattcctcatccaggaatacttcaggaagttcaagaagcggaaagagcag
ggattagtggctaaagtgcctccgaaaacagcactttcactgcaggctggtcttcgtacg
ctgcatgaaatgggtccggaaattcggagggcaatttcaggagacctcactgcagaggag
gaactggagaaggccatgaaggaaacagtgtgtgctgcatctgaagatgatctcttcagg
gtgaagcggtcagacggcttcttcagaaaccacatgaactattatcatcagagtgatgac
tgcactgatttccctccgtccttcaccactcagaggccactgcacatcagcaagtccggc
agccctggagagggaaagtcaccatctcgtgagaaactggtagactccacctttacacca
agcagctattcctcctcaggttccaatgccaacatcaacaatgccaacaacacctccatc
agccactgctacccgtccattagcactgtagatggtcacaccagatccctgctcatacct
gttctactcccctgctcctcatggtccttccctaataaaagctcagactcgggtgaatgt
tatttcccagtaatctctcggggagaggcagctaaagatcaaatgcatgaccagatgctt
acagagaccgaatgccaacatgagcaggacatgctgtcccccaaaatgttggtgctgcag
aatgacgagtgtaagcagttagctgtgatggaacagacagatgggggtgaggacagaaga
ccatggacgtttccccaacaaactgttctttctccaactgcactaagtcaacgatcttcc
attcatctagagtgtctgagcagacagagcagaaatgaaacatcacataagacagcgttg
cctctacacttagtccagcatcaggtgttgatgtcagaacagttggaccactactcacag
gactcctcatttgtcaatgtggccgagcaggagctggctgctacacatgacatgaccatg
gaggtgatggaaaatgtgtcagaaagcatagtcaatgggcctcgcagcccgaacagcaac
ctcctgccctatatgcactgcagcaacggagtgggaaccaaccaggaacaaaaaagagcc
tgggaacgaaaggttcctgagggagaaccacaggtttctgaacatggtcacctgaacagt
aagctactgattgatgaggacatggagggtgtgacaagcttgtag
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