Silurus meridionalis (southern catfish): 124403359
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Entry
124403359 CDS
T08004
Symbol
mre11a
Name
(RefSeq) double-strand break repair protein MRE11 isoform X1
KO
K10865
double-strand break repair protein MRE11
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03440
Homologous recombination
smeo03450
Non-homologous end-joining
smeo04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124403359 (mre11a)
03450 Non-homologous end-joining
124403359 (mre11a)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
124403359 (mre11a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124403359 (mre11a)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124403359 (mre11a)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
124403359 (mre11a)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
124403359 (mre11a)
BRCA1-C complex
124403359 (mre11a)
NHEJ (non-homologous end-joining)
MRX complex
124403359 (mre11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mre11_DNA_bind
Metallophos
Motif
Other DBs
NCBI-GeneID:
124403359
NCBI-ProteinID:
XP_046733021
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Position
20:complement(19062228..19084126)
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AA seq
729 aa
AA seq
DB search
MCVCLSVDLSFLHILTIPLKRSTDVIIMTSCGSTVDDDDTFKILVATDIHLGYLEKDAVR
GNDTFLTFDEIMKCAKQNDVDLVLLGGDLFHDNKPSRKALHCCMEVMRKYCMGDKPILFE
IISDQAVNFGSSKFPWVNYQDENLNISIPIFSVHGNHDDPTGADGLCALDVLSCAGLVNH
FGRSRSVEKVEISPILLQKGNTKIALYGLGSIPDERLYRMFVNNQVSMLRPREDEDAWFN
LFVIHQNRSKHGATNYIPEQFLDDFLDLVIWGHEHECKIAPVRNEQQLFYITQPGSSVIT
SLSPGEAVKKHIGLLRVKGRKMNLQKIPLHTVRQFYIQDVVLLDHPDLFSPEIPNITHKI
QAFCQQKVEEMLEEAERERLGNPLTPDKPLIRLRVDYSGGFESFNTMRFSQKFVDRIANP
KDILHFIRHRESKENVKEESIDFGSLLSRPSSDVLQLRVEDLVKEYFQTAEKNMQLSLLT
EQGMGKAVQEFVDKEERDAIEELINYQLEKTQRFLQERNVEASEEKIDEEICRFRDSKKN
TAEEDEEVQEAINRARTHRDRPHSVGDHNLDQLDEPPDVTMDSDEDDAPLPPVRGRGRGS
RARGGRGQSGGARGRARGGGAQSSRGGRGQKAAFSSPAKNKSIMEAFQAPRGSRGSTKTY
EEVSIEDSDSEDSVSFVKTSRPAQKSSSLSSSSTRGSQSLSQSNKGVCFDEDDDDDEFDP
FRSAGCRKR
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtgtgtttgtctgtagatctgagttttctacatattttaactattccactgaaa
agatcaactgacgtaatcatcatgacgtcatgtgggagtacagtggacgacgacgacacg
tttaagatcctggtcgccacagatatccatctgggctacctggagaaggacgctgtcaga
ggcaacgacacgtttttgacgtttgacgagatcatgaaatgcgcaaaacaaaatgacgtg
gacttggtgttgctgggtggagatctgtttcatgacaacaagccgtcacgtaaagctctg
cactgctgcatggaggtgatgaggaagtactgcatgggtgataaacccatcctgttcgag
atcatcagcgatcaggcggtcaacttcgggagcagcaagttcccgtgggtgaactaccag
gatgagaacctcaacatctccatacctatattcagtgttcacggcaaccatgacgacccg
accggggctgatggtctgtgtgctctggacgtgttgagttgtgctggtctggtaaatcat
tttggacgcagccgttcggtggagaaggtggagatcagccccatcctgctgcagaaggga
aacactaagatcgctctatatggcctcggttcgatcccagatgaaaggctgtaccgaatg
ttcgttaataaccaggtttctatgctccgtccccgtgaggacgaggacgcttggttcaac
ctgttcgtcatccatcaaaacaggagtaaacacggtgccactaactacatccctgagcag
tttctggatgatttcctggacctggtcatttggggtcacgagcacgagtgtaagatcgct
ccggtccgaaacgagcagcagcttttctacatcacacagccagggagctccgtcatcacc
tcactgtctccaggggaagctgttaaaaagcacatcggcctgctcagggtaaagggcagg
aaaatgaatttgcagaagattcctttacacacagtgagacagttttatattcaggacgtg
gttcttttggatcatccggatcttttcagccccgagattcccaacatcacacacaaaata
caggctttctgtcagcagaaggttgaagagatgttggaggaggcagagcgagagagactc
gggaacccactaacacctgataaacctctcattagactacgggtggactacagcggaggg
ttcgaatcgttcaacacgatgcgtttcagtcagaagtttgtggatcgaatagcgaatcct
aaagacattctgcatttcatccgacacagagagagtaaagagaacgtgaaagaggagagt
atagactttggttcgctcctgtctcggccgtcttcagatgttttgcagttacgagttgag
gatctggtgaaggagtactttcagactgcagagaagaacatgcagctgtccctgctgacg
gagcaggggatgggaaaagctgtgcaggagtttgtggataaagaggaacgagacgccatc
gaggagctcattaactaccagttggagaaaacgcagcgctttctccaggaacgaaatgtg
gaggccagcgaggagaagatcgacgaggagatttgccgatttagagattcaaagaagaac
acagcagaggaggatgaagaagtgcaagaggcgataaaccgggcgaggacacacagggac
cgaccgcattctgttggagaccataatttagaccagttagacgaaccgcccgacgtcacc
atggattctgacgaggacgacgcccccctaccaccggttcggggaagagggcggggctct
agagccagaggagggaggggccaaagtggtggagcaagaggaagagcacgaggaggtgga
gcacagtcgagtcgaggtgggcggggccagaaagctgctttttcaagtcctgcaaaaaac
aagtctataatggaagcgtttcaggctccaaggggatctcgaggttccacaaaaacctat
gaggaggtctctatagaggacagcgactctgaggacagcgtgtcctttgtcaagacgtct
cggcctgcacagaaatcctcctctttatcctcctctagtacacgcggctcccagagcctc
agccaatcaaataaaggagtttgctttgatgaggatgatgatgatgatgaatttgatccg
ttcaggtctgcaggttgtcgtaaaagatga
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