Salvia miltiorrhiza (redroot sage): 131006526
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Entry
131006526 CDS
T09291
Name
(RefSeq) uncharacterized protein LOC131006526 isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131006526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131006526
03400 DNA repair and recombination proteins [BR:
smil03400
]
131006526
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
131006526
Messenger RNA biogenesis [BR:
smil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
131006526
DNA repair and recombination proteins [BR:
smil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
131006526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
131006526
NCBI-ProteinID:
XP_057789661
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All DBs
Position
1:complement(9461883..9471237)
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AA seq
892 aa
AA seq
DB search
MESTLKKYFGFSTFRPYQKEIVESILQGKDCLVVMATGSGKSLCYQVPPLILKKTAVVIS
PLISLMQDQVMALKQRDIRAEYLSSAQNDLNAYANAERGRYDILYMTPEKACTLPSSFWS
RLLDYGICLLAVDEAHCISEWGHNFRMEYKQLDKLRDVLSNVPFVGLTATATEKVRDDVV
KSLKLQSPHITIGSFDRQNLFYSCKSFVKGSAFLNELVAEISTCVNKTESTIIYCITVKD
VEEIFVTLKEARVQSGMYHGQMSNKAREDSHRSFIRDEFYVMVATIAFGMGIDKPDIRHV
IHYGCPKSLESYYQESGRCGRDGVPSYCRLYYTRSDFGKGEFYCSEARTADQRKAIMDSF
AAAQRYCMVTTCRRNFLLGYFGEKYSSSSCGSCDNCTSSKKEIDMSREAFLLMACIQSCG
GHWGLNLPVDVLRGSRSKKILDAQFDKIPFHGLGKDISANWWKALSSQLISQDYLVETFK
DIYKTVRVGPKGIQFLNSCNPDYQPPLYITLTPELAGDDAVRVATGNGIVDNLGQDSDGL
SQVEDKLYKMLLEERMKLAKAHGTAPYALCGDQTLRRITLMRPSTRARLANIDGVNQHFL
NTYGDRLLQIIRQLSQELSLHLDGEPRAESPMPSKAATIHRKKSLTPAKFDAWKMWQEDG
LTPQKIANHPSRAAPIKEDTVLVYIIEAGREGCPIDWARLCLEVGLTQEIFNNIQEAVSK
VGTNLKPIKNELPEEVTYNQIKVCLVMQEMGISAEVIASNHQQSCKVDNSKKEMSELSGR
SSLPSQTDSVENQTKVDSAVNNNSAGKFEDADNLTCSRKRQKLEEPEAVQSVAMEATEDS
LLDWLKNFKDGVLLSDILEHFHGSREESVIDLLNGLEGEFLIFRKNNLYHLM
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggagtccactctcaaaaaatacttcgggttctccacattccgaccttaccagaaagaa
attgtggagagtattctgcaaggtaaagattgcttagtggttatggcgaccggcagtggc
aagtcattgtgctatcaggtgcctcctttaatattgaaaaagactgctgtagtgataagt
ccgcttatatccttaatgcaggatcaggtcatggccttgaagcaacgggatatacgagcg
gagtatctttctagtgctcagaatgatctgaatgcctatgctaatgctgagagaggtcga
tatgatattctgtacatgacaccagagaaggcctgtacgcttccgagcagtttctggtca
agattactagattatggaatttgcttattagctgttgacgaagcacattgcatatcagag
tggggacataacttcaggatggaatacaaacaattagacaaactgcgtgatgttctttca
aatgttccatttgttggattaacagcaacagctactgaaaaggttcgtgatgatgtcgta
aagtcattgaagttgcaatctccccatataaccattggctcattcgaccgtcagaatctc
ttctatagttgcaaatcttttgtcaagggcagtgcttttttgaacgaacttgtggcagaa
atctctacctgtgttaataaaacagaatcaactataatatactgtattactgtcaaagat
gtggaagagatctttgtgacccttaaggaagcaagagttcagtctggaatgtaccatgga
cagatgtctaataaagcacgtgaggactcccacagatccttcatcagagatgagttttat
gttatggttgcaactatagctttcgggatgggcattgacaagcctgatataagacatgtg
atacactatggctgcccaaagagtttggaatcatattatcaggaaagtgggcgttgtggt
agagatggggttccttcgtactgccggctatattacacaagaagtgattttgggaagggt
gaattttattgttctgaagcacgcacagcagaccaaagaaaagcaataatggattcattt
gcggcagcacaacgttattgcatggtgacaacctgcagaagaaattttctcttaggatac
tttggagagaaatactcatcgtctagctgtgggagttgcgacaattgcaccagctctaaa
aaagagattgatatgtctagagaggcatttcttcttatggcttgcattcaatcatgcggg
ggacactggggtctcaatttgcctgttgatgttcttcgcggatctagatccaagaaaatt
cttgatgctcagtttgataagattccgttccatggcttaggaaaagatatttcagctaat
tggtggaaggcactatcttctcaattaatttcacaagattatttggtggaaaccttcaaa
gatatatacaaaactgtaagagttggaccgaaaggaattcagtttttgaattcctgcaac
cctgattatcaacctccattatatataacattgactccggaattggctggtgatgatgca
gtcagagttgcaactggtaatgggattgttgacaatttgggtcaggattctgatggatta
tcccaggttgaagataagctctataaaatgcttctggaagagagaatgaaacttgcaaaa
gcacatggaactgctccgtatgcattatgtggtgatcaaacattaagaaggattacattg
atgaggccttcaacaagagcaaggctagcaaatattgatggtgtgaaccagcacttttta
aatacatatggagatcgtttgctgcaaatcattaggcagctatcacaagaactgagtctt
catttggatggggagccaagggcagaatctccaatgccaagtaaggctgcaacgattcac
aggaaaaaaagcttgacaccagcaaagttcgacgcctggaaaatgtggcaagaagatggc
cttacaccccaaaaaattgctaatcatccaagtagagcagctccaataaaagaagacaca
gtcttggtgtatattattgaagccggaagagagggatgtcccattgactgggccagatta
tgtctagaggttggactgacgcaggagatattcaacaacattcaggaagctgtgtcaaaa
gttgggacaaatttaaaacctataaaaaatgaattacctgaagaagtaacctacaatcag
ataaaggtctgcttggtgatgcaagagatgggaatatcagctgaagtaattgcatctaac
catcaacaaagctgcaaagtagataactccaagaaagagatgtcagaactctccggaaga
tccagccttccatcccagactgacagtgtcgaaaatcagacaaaagttgatagtgcggtg
aataataattcagccggaaaatttgaggatgcagataatttaacttgctctaggaaacgc
cagaaacttgaggaaccagaagcagtgcagtctgttgctatggaagctactgaggattct
ttacttgactggctcaagaacttcaaagatggggtactgctgtcggatattctggagcat
ttccatggatcgagagaagagtcagtgatcgacctcctaaatggccttgagggtgagttt
ttgatattcaggaagaacaatctttatcatctgatgtaa
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