Salvia miltiorrhiza (redroot sage): 131009193
Help
Entry
131009193 CDS
T09291
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131009193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
131009193
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
131009193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_19
TPR_16
TPR_17
TPR_8
TPR_9
TPR_15
TPR_6
BTAD
TPR_12
EXS
Motif
Other DBs
NCBI-GeneID:
131009193
NCBI-ProteinID:
XP_057792428
LinkDB
All DBs
Position
2:complement(74162934..74171561)
Genome browser
AA seq
1175 aa
AA seq
DB search
MALAEEEDEFSALKQLQETASSNPDDFTVRFNLGVLLWEKGEGRPELRHEAVEHFMVAAK
LNPQNAAAFRYLGHYYTRVSPEPQRALKCYQRAVALNPDDSDAGEAICDLLDEGGKDNLM
IAVCREASEKSARAFWAFRRLGYLQAHLKNWSEAIQSLQQAIRGFPTSADLWETLGLAYG
RMGMFTAALKSYGRAVDLDNSRIFALVESGNISLMLGSFRKGTEQFQQALIISPHNVSAN
YGLASAFLGLAEECVNSGAFRWGASLLEEATEVAMHVTSLAGNFSCSWKLHGDIQLMYAR
CYPWTEEAMPGHVDEISFKSSISTWKRTCFIASRNASRSYQRALHLAPWLANAYIDVAIA
ADISLSFKESPKDDLSIWPIAEKMCFGGILLEGYNDEFWVALACLSRDTALKQHALVRGL
QLDVSLAVAWAYLGKLYRLEGEKKLAQQAFDLARSIEPSLALPWAGMSADADVRKFEQNE
AYECCLRAVQISPVADFQVGLAKLALHSNCLSSSEVFAAIQQALLRIPHYAESHNLNGLA
CESRSDYQGAVASYRLARHALKYSAGKTSESHLDDISINLARSLCMAGNASDAVEECEYL
RQKGQLDTVGLQIYAICLWRLGKNDMALSATRSLASSILSMDENLAAASISFICRLLYNI
SGQESAITSILKMPKQLFSSSKISFIVTAIHVLDPNNQLEPVVSSSRSFITSREEIISMH
MLITVGKLLKYGNENSLGIQKGVDHLRKAVHMFPNSIVLRNLLSYLLLSSKERGYLCLAT
RCSSLDLSDYQKDDGLRSAYEILGAGNVACYAIGSSNQKFPLPTCRGQCHSGSGAIQVLQ
KYLHQEPWNFNARYLLTLNCLQKTRAERFPQHGCRVVERLTAVALSDQICSSKDISRQYQ
NFQLLLCAAEVNLQQGNNTECFRLVRSALGSSLHSNHLFFAHLLLCRAYATEDDLVNLNK
EYRYCLELGTNSHIGWICLKFIESRYGLQDDSTILPLKFEECSKDLKTSWNMWTALFNLV
QGLISIRFGDFVAAEEFFSQACCVADGESCFFLCHGAICMELARQKCESHYITHAMRSLK
KAKDTSSDPLPIVSLLLAQAEASLGSKAKWLINLRDEWFSWPPENRSAELLFQMHLLSRE
SSHGDNAMRWILRAIHTNPSCSRYWKFLLKDTYVV
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggctctggcagaagaggaagacgaattctccgctttaaagcaattgcaggaaacagcg
agttccaatccggatgactttactgtccgttttaatctgggagtattgctatgggagaag
ggggagggaaggccagaactgaggcacgaagcggtggagcatttcatggtagcggctaaa
ctcaaccctcagaatgccgctgcatttagatatttgggccattactatactcgcgtctcg
cctgagccccagcgagctctcaagtgttaccagagagctgttgctctaaatcctgatgat
tctgatgccggggaagcaatttgtgatttattggatgagggaggcaaagataacttaatg
attgctgtttgtcgtgaagcttctgagaagtctgccagggctttttgggctttccgtcgt
ctgggataccttcaggctcatctaaaaaattggtccgaagccatacagagcctccaacaa
gccattcgtggatttcctactagtgctgatttgtgggagacgttaggtcttgcttacgga
cgaatgggtatgtttactgctgcacttaagtcatatggtagagctgttgatttggataat
tcgaggatatttgctttggttgaaagtggaaatatttctttgatgcttggttctttcagg
aagggaactgagcaatttcagcaagcattgataatctccccacacaatgtgtccgcaaat
tatgggcttgcttctgcttttcttggtttagctgaggaatgcgtcaattcaggtgccttt
agatggggagcttcacttttagaggaagcaactgaagttgccatgcatgttacatcttta
gctggtaacttttcatgttcatggaagctacatggagatattcagcttatgtatgccaga
tgttacccatggacagaggaagctatgccggggcatgttgacgagatatctttcaaatct
tctatcagtacatggaaaaggacttgcttcattgcttcaagaaatgccagtcgctcctat
cagcgtgctttgcacttggccccttggctagctaatgcatatattgatgttgccatagca
gcagatattagtttatcttttaaggaatctcctaaagatgatctgagtatatggcctatt
gctgaaaagatgtgcttcggcggtatactacttgagggttacaatgatgaattttgggtg
gcattggcatgtttatcccgtgatactgcactaaagcaacatgctttggtacgtggatta
caattggatgtgtctctagcagttgcatgggcataccttgggaagctctatagactggaa
ggtgaaaagaaattggcccaacaagcatttgaccttgctagaagtatagaaccttcactt
gcattaccatgggcaggcatgtcagcggatgctgatgttagaaagtttgagcagaatgaa
gcatatgagtgctgtctacgtgctgtacagatatccccggttgcagacttccaggttggt
cttgcaaagcttgcgttgcattcaaattgcttgtcatcttcagaggtctttgcagccatc
caacaggcattgctgcgtattccacactatgctgagtctcacaatttgaatggtctagca
tgtgaatcaagatctgattatcaaggtgccgtcgcctcctacaggctggcacgacatgct
ctaaaatattcggcaggcaaaacatcagaatctcatttagacgatatatccatcaatttg
gcaagatcactttgcatggctggaaatgcaagcgacgcagttgaagagtgcgaatattta
aggcaaaaaggacagctcgatacagtgggtctgcagatatatgctatatgtttatggaga
ctgggcaagaatgatatggctctatctgcaacaagatcacttgcttcaagcattttatct
atggatgaaaatctagctgctgcttccattagcttcatctgtaggttgctttataacatc
tccggacaggaatctgcaatcacaagcattttgaaaatgcccaaacaactttttagcagt
tcgaaaattagttttattgttactgctattcatgttctggacccaaacaatcaacttgag
cctgttgtttccagcagtcgttcctttattacatctcgtgaagaaattatctcaatgcac
atgttaattacagttggaaaacttctgaagtacgggaatgagaactcccttggaattcaa
aagggagtagatcaccttagaaaggcagttcacatgttccccaacagcattgtattgagg
aatcttcttagttatttgttactatcaagcaaagaacggggatatctttgtcttgcaacc
cgatgctcttccctggatttgtccgactatcaaaaggatgatggtctcagatcagcatat
gagatccttggtgctggaaatgttgcttgttatgccattggaagttcaaatcagaagttt
ccattaccgacctgcagaggccaatgccattccggatctggggccattcaagtgctgcaa
aagtatttgcatcaagagccttggaactttaatgcaaggtatttacttacgctaaactgc
ttacagaagactcgtgcagaaagatttcctcaacatggttgccgtgttgtagagcggcta
acagctgtggctctgtctgatcaaatttgttcgagtaaagacatatcaaggcaataccag
aatttccagcttcttctctgtgctgccgaggttaatctgcaacaaggcaataatactgaa
tgcttcagacttgtgagaagtgctttaggctcctcactccatagtaaccatctttttttc
gcacatttgctactttgccgtgcatatgccactgaggatgatctagtgaacctgaacaaa
gaatacagatattgtttggagcttggaactaattctcatattggctggatttgtctgaag
tttattgaatccagatatggcctgcaagatgattctaccattttacctctgaaatttgaa
gaatgctctaaagatctcaagacgtcgtggaatatgtggacagctctgtttaatttggtg
cagggcttgatttctattcggtttggcgattttgttgctgctgaagagttcttttcacaa
gcatgctgtgtagctgatggcgagagttgtttctttctttgtcatggtgccatatgcatg
gagctcgccagacagaagtgcgagtcacattacataacacatgccatgagaagtctcaag
aaagcgaaagatacctcttctgatcctttgcctattgtttcactgttgctggcccaagca
gaagcaagccttggctcgaaagcaaagtggctaatcaaccttcgcgatgaatggttttct
tggcctccagaaaaccgatctgctgagctcttatttcaaatgcatttgctatctagagag
tcatcccatggtgacaatgcaatgagatggattctacgagcgatccacacgaatccttcg
tgttcgagatattggaagttcttgttgaaggacacatacgtagtttag
DBGET
integrated database retrieval system
