Spiroplasma mirum ATCC 29335: SMM_0060
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Entry
SMM_0060 CDS
T03003
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smir
Spiroplasma mirum ATCC 29335
Pathway
smir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMM_0060 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smir03021
]
SMM_0060 (rpoB)
03400 DNA repair and recombination proteins [BR:
smir03400
]
SMM_0060 (rpoB)
Enzymes [BR:
smir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMM_0060 (rpoB)
Transcription machinery [BR:
smir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMM_0060 (rpoB)
DNA repair and recombination proteins [BR:
smir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMM_0060 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHF60536
UniProt:
W0GPR1
LinkDB
All DBs
Position
60293..64183
Genome browser
AA seq
1296 aa
AA seq
DB search
MALKEKEFGHYAKRIDYTKVSGNLDLPNLIEIQTETYDWFKKQGISQVFEEVFPIVGHEE
NVILEMLDWEFREPRRTIPQSKEESKIYEAPIYSNLKLTINSKDLEIEKGLIKGDAELIK
SWIEEKIGHNITILKKTADVVYFDIHSGDEEATCIATIKERTDLKLVIEITIEKIGEVFF
GDFPLMTGKGTFIVNGSEKVVVSQLVRSPGAYYKKDFNRKTGENIYYVDLIPSRGTWLEF
ESDMKKIKTGKEERFDTVYYVKIDKSRKVSVASLFTALGVTKETVFDIFGDNKYVGNTYD
LEQYSGDINYDQQVAAQEIYKKIRAGETATPDGATKYLYGLLFDKRKYDLTKAGRFKLIQ
KLSVENRIYNKVLAEDIKDVNGKVIFSEGTLFDKESVNKLKEVLKAGACLEEVYFNTEIP
GNNKIQKIKVYVDNELRNQVENIIGIDPNATDEFVTAPDILATFSYLLNLKHDIGEVDDI
DHLGNRRVRTIGELLQNQFRIGLLRIEKNVKEKMSTSNIFKMKPSNIINNKPLSAIIGEF
FNLSQLSQFMDQTNPLAELTNKRRLTALGPGGLSRERAGLEVRDVHYSHYGRICPIETPE
GPNIGLINSLATYAKINSFGFIETPYRKVIDNKVTSQNDYLTADEEKNYVVAHANIRLSD
KGKILDDQVIARFQGENIIASRTEVDYVDVSPKQIVSIATSCIPFLENDDANRALMGANM
QRQAIPLINPQSPYVGTGVEYAAAKDSGLAIVSQYDGVIDFVDATKIILKTKEGLKTYNL
DTFVRSNQGTSLTHVPLVKQGQKVVKGQILADGPSIDKGELALGQNVVVAFTTWNGYNYE
DAIIVSERLVADDVFTSIHIEEYTIERRQTKQGAEEITREIPNISENARKFLDDDGLVII
GTEVKPGDILVGKVTPKGQTQLSPEDKLLQAIFGEKSKNVKDNSLRVPNGGEGIVQAIKR
FPREKYELAADVLEVVKVYIVQKRKIQEGDKMAGRHGNKGVISKILPIEDMPHLEDGTPV
DIMLNPLGVPSRMNIGQVLEIHLGMAAKKLGQKVSTPVFDGMTNDELIELMDKAGMKNFG
KEILVDGRTGEKFDNPVSVGVMYMLKLSHMVDDKLHARNVGPYSLITQQPLGGKAQNGGQ
RFGEMEVWALEAYGAAHTLREILTIKSDDIKGRTRAYEAIVKDKKIPEPGIPESFNVLTR
EIQGLGFNIQMIDEDGNIKNINSYDNEDSYVIEELTNTTIDEFEDEFDISKFILNNDNIE
NAEFELNIEEDPNADEDSYDDGDHNPIKPDYQSDEE
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggcattaaaagaaaaagaatttgggcattacgctaaaagaattgattatacaaaagta
agtgggaatttggacctgccgaacttaattgaaattcaaactgaaacgtatgattgattt
aaaaaacaaggaattagccaagtgttcgaagaagtattcccaattgttgggcatgaagag
aatgttattttagaaatgttagattgagaatttagagaaccacgacgaacaattccccaa
tctaaagaagaatctaagatttatgaagcaccaatttattcaaatttaaaactaacaatt
aattcaaaagatttagaaattgaaaaaggactcattaaaggtgacgctgaattaattaag
tcatgaattgaagaaaaaatcggtcataatattactattttgaaaaaaacagctgatgtt
gtgtatttcgacatccattcaggagatgaagaagcaacttgcattgcaacaattaaagaa
cgaacagatttaaaattagtcattgaaatcacaattgaaaaaattggtgaagtttttttt
ggtgattttccgttaatgactggaaaaggaaccttcattgttaatggttcagaaaaagtt
gttgtttcacaattagtccgttcaccaggggcttattataaaaaagattttaaccgtaaa
accggagaaaacatttattatgttgatctaattccgtctcggggaacatggttagaattt
gaatcagatatgaaaaaaattaagactggaaaagaagaacgttttgacactgtttattat
gtcaaaattgataaatcaagaaaagtttcggtggctagtttatttacagccttaggagta
accaaagaaactgtttttgatatttttggtgataataaatatgttggaaacacttatgat
ttagaacaatatagtggtgatattaattatgatcagcaagtagcggcccaagaaatttat
aaaaaaatccgtgcaggagaaactgccactcctgatggagctactaaatatttatatggt
ttattatttgacaaacgtaaatatgatttaacgaaagccggaagattcaaattaattcaa
aaattatcagttgaaaaccgaatctataataaggttttagcagaagacattaaagatgtt
aatggtaaagtaatttttagtgagggaactttatttgataaagaaagtgttaataaatta
aaagaggttttaaaagctggtgcttgtttagaagaagtctactttaatactgaaattccc
ggtaataataaaatccaaaaaattaaagtatacgttgataacgaattaagaaatcaagtt
gaaaatattattggaattgatccgaacgcaacggatgaatttgttacagcgccagatatt
ttagcaactttttcatatttattaaacttaaaacatgatattggagaagttgatgatatt
gatcacttaggaaaccgtcgtgttcgtacaattggagaattgctacaaaaccaatttcga
attggacttttaagaattgaaaaaaatgttaaagaaaaaatgtcaacttcaaatattttc
aagatgaagccatcaaatattattaataataaacctttatcagcgattattggtgagttc
tttaacttgtcacagttgtcacagtttatggaccaaactaaccccttagcagagttaaca
aacaaacgtcggttaacagccttagggccgggtggattatcacgtgaacgcgctggttta
gaagtacgggatgttcactactcacactacggaagaatttgtccaattgaaacaccagaa
gggcctaacattgggttaattaatagcttagcaacttacgcaaaaattaattcatttggc
tttattgaaacaccataccgcaaagtaattgataataaagttactagtcaaaatgattat
ctaaccgctgatgaagaaaaaaattatgtggtggcacatgctaacattcgtttaagcgat
aagggtaaaattttagacgaccaagtaattgctcggttccaaggtgaaaacattattgca
tcacgaactgaagttgattatgttgatgtgtcaccaaaacaaattgtttcaattgctaca
agttgtattccgttcttagaaaatgatgatgcgaaccgggcattgatgggagccaacatg
caacgacaagccatcccactaattaatccccaatcaccatatgttggaacaggagttgaa
tatgccgcagcgaaagactcgggattagcaattgtttcccaatatgatggagtaattgat
tttgttgatgctacaaaaattattttaaaaaccaaagaagggttaaaaacatataaccta
gatacttttgtgcgtagtaatcaggggacttctttaacgcatgttccgttagttaaacaa
gggcaaaaagttgtgaaaggtcaaattctagctgatggtccttcaattgataaaggggaa
ttagccttaggacaaaatgtagtggttgcctttacaacttgaaatggttataactatgaa
gatgccattattgtttctgaacgtttagttgcggatgatgtttttacttcgattcatatt
gaagaatatacaattgaaagacgccaaacaaaacaaggagcagaagaaattacgagagaa
attcctaatatttctgaaaacgcgcggaaattcttagatgatgacgggttagttattatt
ggaaccgaagttaaaccaggtgatattttagtggggaaagttaccccaaaagggcaaacc
caactttcaccagaagataaactattacaagcaatttttggtgaaaaatcaaaaaatgtt
aaagataattctttacgagtaccaaatgggggggaaggaattgtgcaagcaattaaacga
ttccctcgtgaaaaatatgaattagcagctgatgtgttagaagttgttaaagtttatatt
gtccaaaaacgtaagatccaagaaggagataaaatggctggtcgtcatggtaacaaaggg
gttatttcaaaaatcttaccaattgaagatatgccacacttagaagatggaaccccagtt
gatattatgttaaacccattaggggtgccatcacggatgaatattggacaggtgctagaa
attcatttaggaatggcggctaaaaaattagggcaaaaagtttcaacaccagtttttgat
ggaatgacaaatgatgaattaattgagctaatggataaagcaggaatgaaaaacttcggg
aaagaaattttagttgatggtcgtactggtgaaaaatttgataacccagtttcagtggga
gtaatgtatatgttaaaactatctcacatggttgatgacaaattacatgctcggaatgtc
ggaccatactcattaattacccaacaaccgttaggaggaaaagctcaaaatggggggcaa
cgttttggagaaatggaagtttgggcgttagaagcttacggagcagcgcataccttacga
gaaattttaacaatcaaatccgatgatattaaaggaagaacccgcgcttacgaagcaatt
gttaaagataagaaaattcctgaaccaggaattcccgaatcatttaatgttttaactcgt
gaaattcaagggttaggatttaatattcaaatgattgatgaagatggaaacatcaaaaat
atcaatagttatgataatgaagatagttatgtaattgaagaattaactaatacaacaatt
gatgaatttgaagatgagtttgatatttcaaaatttattctaaataacgataatattgaa
aatgctgaattcgaattgaatattgaagaagatccaaatgcagatgaggatagttatgat
gatggtgatcataacccaattaaaccagattatcaaagtgatgaagaatag
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integrated database retrieval system
