Stenotrophomonas maltophilia K279a: Smlt0898
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Entry
Smlt0898 CDS
T00718
Symbol
rpoB
Name
(GenBank) putative DNA-directed RNA polymerase, beta-subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sml
Stenotrophomonas maltophilia K279a
Pathway
sml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Smlt0898 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sml03021
]
Smlt0898 (rpoB)
03400 DNA repair and recombination proteins [BR:
sml03400
]
Smlt0898 (rpoB)
Enzymes [BR:
sml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Smlt0898 (rpoB)
Transcription machinery [BR:
sml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Smlt0898 (rpoB)
DNA repair and recombination proteins [BR:
sml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Smlt0898 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
PrmC_N
Motif
Other DBs
NCBI-ProteinID:
CAQ44468
UniProt:
B2FQ38
LinkDB
All DBs
Position
942236..946402
Genome browser
AA seq
1388 aa
AA seq
DB search
MEDLMTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQENVDPAKRTDHGLHA
ALKSVFPIASYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESST
KAIKYVKEQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
YSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFH
INPDEGVQLELVPERLRGETLGFDLADGDKVIVEAGKRITARHIKQLEASGIAALAVPDD
YIVGRILSHDVVDASTGELLAQANDEITDEQLQAFRKAGVDAVGTLWVNDLDRGPYLSNT
LRIDPTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSAVGRMKFNRRVG
RKETTGEAVLYDSKYFGERNDEESKRLVAAHGDSSDILDVIKVLTEIRNGRGVVDDIDHL
GNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGS
SQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPN
IGLINSLAVYARTNQYGFLETPYRKVVDGKVYDEVEFLSAIEENEYVIAQANALTDAKGT
LTEQFVPCRFQGESLLKPPAEVHFMDVSPMQTVSIAAALVPFLEHDDANRALMGANMQRQ
AVPTLRAQKPLVGTGIERAVARDSGVTVNARRGGEIVQIDAARIVVKVNEEEIVGATDAG
VDIYNLVKYTRSNQNTCINQRPLVQVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPW
NGYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDE
SGVVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGT
VIDVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYMRLRSQIVGKVVNGG
AGLKKGDVITDAFLDGLKKADWFALRMKDEDASEAIERAQKQIQAHEKEFERRFADKRGK
ITAGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMASGETVD
IVLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQAMMEAQAAVADLRKFLDDIYNHDDTN
VANRVDLSQFSDEELLRLARNLTDGVPMATPVFDGATEAEIKRMLELADLPSSGQTQLYD
GRTGEAFDRHTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLA
INMELEDN
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
gtggaagacctcatgacgtcctattcgttcaccgaaaaaaagcgtatccgcaaggatttc
ggcaagcagcgctcgattctcgaagtgccgttcctgctcgccatccaggtggattcctat
cgtgaattcctgcaggaaaacgtcgatccggccaagcgcacggaccacggcctgcacgct
gcgctgaagtcggtcttcccgatcgccagctacagcggcaacgctgccctggaatacgtc
ggctacaagctgggcgaaccggtcttcgacgagcgcgagtgccgccagcgtggcatgagc
tacggcgccccgctgcgcgtgaccgtgcgcctggtgatctacgaccgtgagtcgtcgacc
aaggccatcaagtacgtgaaggagcaggaggtctatctgggcgaaatcccgctgatgacc
gagaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgc
tcgccgggcgtgttcttcgaccacgaccgtggcaagacccacagctcgggcaagctgctg
tacagcgcccgcatcattccttaccgcggctcctggctggacttcgagttcgacccgaag
gacgcgctgttcacccgtatcgaccgtcgccgcaagctgccggtgtcgatcctgctgcgc
gcgctcggctacagcaacgaagagatgctggccgagttcttcgagatcaacaccttccac
atcaacccggatgaaggcgtccagctggagctggtgccggagcgcctgcgtggcgaaacc
ctgggcttcgacctcgccgacggcgacaaggtcatcgtggaagccggcaagcgcatcacc
gcgcgccacatcaagcagctggaagcctcgggcatcgccgccctggccgtgccggacgac
tacatcgtcggccgcatcctgtcgcacgacgtggttgacgcctcgaccggcgaactgctg
gcccaggccaatgacgagatcaccgacgagcagctgcaggccttccgcaaggccggtgtg
gatgccgtgggcaccctgtgggtgaacgatctggatcgtggcccgtacctgtccaacacc
ctgcgcatcgacccgaccaagacccagctggaagccctggtcgagatctaccgcatgatg
cgtccgggcgagccgccgaccaaggacgctgcgcagaacctgttccacaacctgttcttc
accttcgagcgctacgacctgtccgcggtcggccgcatgaagttcaaccgtcgcgtgggc
cgcaaggaaaccaccggcgaagccgtgctgtacgacagcaagtacttcggtgagcgcaac
gacgaagagtccaagcgcctggtcgccgcccacggcgacagctccgacatcctggacgtg
atcaaggtcctgaccgagatccgcaacggtcgcggcgtggtcgacgatatcgaccacctg
ggcaaccgtcgcgtgcgttcggtcggcgaaatggccgaaaacgtgttccgcgtcggcctg
gtccgcgtcgagcgcgcggtcaaggagcgcctgtcgatggccgagtccgaaggcctgacc
ccgcaggagctgatcaacgccaagccggttgccgctgccatcaaggagttcttcggctcc
tcgcagctgtcgcagttcatggaccagaacaacccgctgtcggaagtgacccacaagcgt
cgcgtctcggccctgggcccgggcggcctgacccgtgagcgcgccggcttcgaagtgcgc
gacgtgcacccgacccattacggccgcgtctgcaccatcgaaaccccggaaggcccgaac
atcggcctgatcaattcgctggccgtgtacgcccgcaccaaccagtacggtttcctcgag
actccgtaccgcaaggtcgtggacggcaaggtctatgacgaagtcgagttcctgtcggcg
atcgaagaaaacgagtacgtcattgcgcaggccaacgcgctgaccgacgccaagggcacc
ctgaccgagcagttcgttccgtgccgcttccagggcgaatcgctgctgaagccgccggcg
gaagtccacttcatggacgtctcgccgatgcagaccgtgtcgatcgcggccgcgctggtt
ccgttcctggagcacgatgacgcgaaccgcgcactgatgggcgccaacatgcagcgtcag
gcggtgccgaccctgcgtgcgcagaagccgctggtcggtaccggcatcgagcgcgccgtg
gcgcgtgactccggtgtgaccgtgaacgcccgccgtggtggcgagatcgtgcagatcgac
gcggcccgcatcgtggtcaaggtcaacgaggaagagatcgttggcgctaccgatgcaggc
gtggacatctacaacctggtcaagtacacccgttcgaaccagaacacctgcatcaaccag
cgtccgctggtccaggtgggtgacgtcatcgcccgcggcgacgtgctggccgacggtccg
tccaccgacatcggcgaactggccctgggccagaacatgctgatcgcgttcatgccgtgg
aacggctacaacttcgaagactccatcctgctctccgagcgcgtggtggaagaggatcgt
tacaccacgatccacatcgaagagctgacctgcgtcgcgcgtgacaccaagctggggccg
gaggaaatctccgccgacatcccgaacgtctccgagcaggcgctgaaccgcctggacgag
agcggcgtggtgtacatcggtgcggaagttcgcgccggcgacatcatggtcggcaaggtc
accccgaagggcgaaagccagctgaccccggaagagaagctgctgcgcgcgatcttcggc
gagaaggcttcggacgttaaggacagctcgctgcgcgttccgccgggcatggacggcacc
gtcatcgacgtgcaggtcttcacccgcgacggcatcgagaaggacaagcgcgcccgccag
atcgaagagtctgaaatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctg
gaagccgccatctacatgcgtctgcgttcgcagatcgtgggcaaggtggtcaacggtggc
gctggcctgaagaagggtgacgtgatcaccgacgccttcctggacggcctgaagaaggct
gactggttcgccctgcgcatgaaggacgaggacgcttcggaagccatcgagcgcgcgcag
aagcagatccaggcgcacgagaaggaattcgagcgtcgcttcgccgacaagcgcggcaag
atcaccgccggtgacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcc
gtgaagcgccgcatccagccgggcgacaagatggcaggccgccacggcaacaagggtgtg
gtctccaacgtggtgccggtcgaggacatgccgtacatggcctcgggcgaaaccgtggac
atcgtgctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagatcctggaagtg
cacctgggctgggcggccaagggcctgggccgcaagatccaggcgatgatggaagcccag
gcggcggttgccgacctgcgcaagttcctggacgacatctacaaccacgacgacaccaac
gtggccaaccgtgtcgacctgtcgcagttcagcgacgaggaactgctgcgtctggcccgt
aacctcaccgacggcgtgccgatggccaccccggtgttcgacggcgccaccgaagcggaa
atcaagcgcatgctggaactggccgacctgccgagcagtggccagacccagctgtacgac
ggccgcaccggtgaagcgttcgatcgccacaccaccgtcggttacatgcactacctgaag
ctgaaccacctggtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctcgtc
acccagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaa
gtctgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaag
tccgatgacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggtgagcacgag
atggtcgcgggcatgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctggcc
atcaacatggaactggaagacaactga
DBGET
integrated database retrieval system
