Schistosoma mansoni: Smp_148230
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Entry
Smp_148230 CDS
T01095
Name
(RefSeq) putative pre-mRNA-splicing factor CLF1
KO
K12869
crooked neck
Organism
smm
Schistosoma mansoni
Pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_148230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smm03041
]
Smp_148230
03036 Chromosome and associated proteins [BR:
smm03036
]
Smp_148230
Spliceosome [BR:
smm03041
]
Complex B
Other components
Prp19-related factors
Smp_148230
Complex C
Smp_148230
Chromosome and associated proteins [BR:
smm03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
Smp_148230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
TPR_14
HAT
TPR_19
Suf
TPR_16
TPR_CcmH_CycH
TPR_17
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
8341798
NCBI-ProteinID:
XP_018650028
LinkDB
All DBs
Position
2:13234680..13249548
Genome browser
AA seq
917 aa
AA seq
DB search
MKTHKQEVSDHKGSRGDDINNIEMAEILIVQFIDQSNQEPTSFKRSTTVVPTEGQEYVHI
TPKLLMIKTRSLNLSKPPDVTIIAVRGTKWTCGPLGNCLPIVVTEYHLERFTRESLDTNF
KNALVIQDERGIIELCVTVIRVSQIIEVANKMITDKRAVEDSGVPKNKKAKIARVKNKMP
AAVQITAEQLLREAKERELEVTPKAPQQKITSLSELRDFQLRKRKDYEDNIRKNRLAMQN
WIKYAKFEETQGELQRARSVFERALDVDYRNVGLWLKYAEMEMRHKQVNHARNLWDRAVT
LMPRANQFWYKYTYMEETLGNVAGARQIFERWMEWQPEEQAWHAYINFELRYKEMDRARL
VYERFVLVHPEPKNWIKYSKFEERNGFINSARLVFERAVEFFGTDNPQARLLIDFARFEE
RQKEYERARVIYKYALENLPKDDCQEIYKAYTLHEKKYGDRLAIEDVILSKRKFQYEEEV
QANPHNYDVWFDYVRLMEEEGSIEQTREIYERAVANVPPIKEKRYWRRYIYLWLNYALYE
ELSAIDLERTRQVYRFCLKLIPHRRFTFAKIWLYAAKFEIRQKKLTDARKLLGTALGMCP
KDKLFRGYIELEIQLREFDRCRKLYEKFLEFSPENCTTWMRYAELESLLGETDRARGIYE
LAINRKLLDMPELLWKAYIDFEIEQYDWERARSLYRRLLNRTQHVKVWLSLANFELCALN
KLTAADLDDEDLEHLKDVELDKETLIQEHNENEINKAVERSRKIYQEANKALKYAEDKEQ
RVRLLEAWKEFEYEYGTEKTQRDVDKLQPQKVIRSRRLGDERSGWEEYIEYTFPDTDAEK
PNQKLLTMAARWAEQMERKKAAAEAEGKEDSDSSEESEEEEEDDLQGDEDDNRIPEREPT
WFDRKNKEEIEIDEDSD
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcacaagcaagaggtctctgatcacaagggctctagaggtgatgatattaac
aacattgagatggcagaaattcttattgtccagttcatcgatcaatcaaatcaggaacct
actagctttaaacgctccacaactgtagtgccaactgaaggccaagaatatgtccacata
actcccaagttattaatgataaaaacaagatccctgaacctatccaaaccaccagatgtg
actataatcgcagtgcgcggaacaaaatggacttgcggcccgttaggaaattgtctcccg
attgtcgtcacagagtaccatctagaacgatttacccgagagagcttggacactaatttc
aaaaacgcattagtgattcaggatgaaagaggaattattgaattgtgcgtcactgttatt
cgtgtttcccagataatcgaagtcgcaaacaaaatgataacagataaaagagctgttgag
gactcaggtgttcctaaaaataaaaaggcgaagattgctagggtaaaaaataaaatgcca
gctgctgtgcaaataacagctgagcagctccttcgagaagctaaagagagagaactggaa
gtcactccgaaggccccacaacagaaaattacaagcctttcagagttgagagattttcag
ttgcgtaaaagaaaagattatgaagataacatcaggaagaacagattggctatgcaaaac
tggattaagtatgcaaagtttgaggaaactcaaggtgaacttcaaagggcccgttcagtt
tttgaacgtgctttggatgtcgattaccggaatgttggtctttggcttaagtatgccgag
atggaaatgcgccataaacaggtgaaccatgctcgaaacttgtgggaccgggcggttact
ttaatgcctcgagctaatcagttctggtataaatacacttatatggaagaaacactgggt
aatgttgctggtgcccgacaaatattcgagagatggatggaatggcaacccgaagaacag
gcttggcatgcctatattaatttcgaacttcggtataaagagatggatcgagcacgtcta
gtttatgaaagatttgttctagttcaccctgaaccaaaaaactggattaagtattcgaaa
ttcgaagaaagaaatggttttatcaattcagctcgtttggttttcgagagggcagtagag
ttttttggtacagataatccccaggctcgtttgttgattgattttgcccggttcgaagaa
cgtcaaaaagagtatgaacgtgctcgcgttatttataagtatgcactagaaaatttacca
aaggatgattgtcaggagatttacaaagcttatacacttcatgagaaaaagtatggcgat
cgtctagctattgaagatgttattctaagcaaacgaaagtttcagtatgaagaggaagtc
caagcaaaccctcataattatgatgtgtggttcgattatgtccgtttaatggaagaagag
ggttcaattgaacagacacgagaaatttatgaacgtgctgttgcaaatgtaccaccaatc
aaagaaaaaagatattggagacgctacatttatctttggttgaattatgcactatatgag
gaactatcagcaatcgacctagaaagaacacgtcaggtgtacagattttgcttaaagtta
ataccacacagacgtttcacatttgctaaaatttggctatatgcagcaaagttcgaaatc
cgtcaaaagaaattaacagatgcgaggaaactactgggtactgctctgggtatgtgtcca
aaagacaagctattccgcggttatattgaattggagatccagttgagagaattcgataga
tgtcgtaaattatatgaaaaattcctggaattttctccagaaaattgtactacatggatg
aggtatgctgaattagaaagtcttctgggagagacagatcgtgcacgaggtatttatgaa
ttagcgatcaacaggaaattgctggatatgccggaattattatggaaggcatatattgac
ttcgagattgaacagtatgattgggaacgtgctcggtcactttatcgaagactgctaaat
cgaacacaacatgtcaaagtatggttaagtcttgcaaacttcgagctgtgtgcgttgaac
aaactcacagccgctgatttagatgatgaagatttagaacatttaaaagatgttgaactg
gacaaagagacattaatacaagaacataatgaaaatgaaatcaataaagctgtagaacgt
tcacgtaaaatctaccaagaagcaaataaagctctgaaatatgcagaggataaggaacaa
cgtgttcgattacttgaagcttggaaggaatttgaatatgaatatggaactgaaaaaaca
caacgagatgttgataaactacaaccgcagaaggtcatccgcagtcgccgacttggtgat
gaacgtagtggttgggaagagtatattgagtatacattccccgatacagatgcagaaaag
ccaaaccaaaaattgctgacaatggctgctagatgggcagagcaaatggagaggaaaaaa
gcagctgcagaggctgagggtaaagaggatagcgattccagcgaagaatctgaagaagaa
gaggaagatgatttacaaggtgatgaagatgataatcgtattcctgagagagagcctaca
tggtttgatcgaaaaaacaaagaagaaattgaaatcgacgaagacagtgattaa
DBGET
integrated database retrieval system
