KEGG   Selaginella moellendorffii: SELMODRAFT_176960
Entry
SELMODRAFT_176960 CDS       T01496                                 
Symbol
COP1-2
Name
(RefSeq) hypothetical protein
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
smo  Selaginella moellendorffii
Pathway
smo04120  Ubiquitin mediated proteolysis
smo04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    SELMODRAFT_176960 (COP1-2)
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    SELMODRAFT_176960 (COP1-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smo04121]
    SELMODRAFT_176960 (COP1-2)
Enzymes [BR:smo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     SELMODRAFT_176960 (COP1-2)
Ubiquitin system [BR:smo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    SELMODRAFT_176960 (COP1-2)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     SELMODRAFT_176960 (COP1-2)
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_2 WD40_like zf-RING_UBOX zf-RING_5 U-box TAF1C_beta-prop zf-C3HC4_4 zf-rbx1 zf-Nse
Other DBs
NCBI-GeneID: 9653466
NCBI-ProteinID: XP_002978526
JGI: 176960
UniProt: D8S4Z7
LinkDB
Position
Unknown
AA seq 647 aa
MSFSSEQQQQQQQQQGPRLLADKDFQCPICIQTMKDAFLTACGHSFCYMCIITHLNNKKN
CPCCGVYLTSSQLYPNFLLNKILKKVATSQISCASPTEQLRFALQQGVDVPLKEIDSLLV
LLSDKKRKAEHEEAEVNMEVLLEFLQRSRQQKMEELSEIQGDLQSLREDISTVEIQRQEL
LKSRQTSSLKWRFLLDCPALDCPAQENPYNRPAVPLHRVGQAGAALLGGEQRKATRGPLV
KKNGGTSNGTSDFEPLPCKTAKKKRMLNQFEDLQDCYLNKRRRDRQMKKFEAIVKKEKDE
EACGGFNQPSGLEDFRSILAGFTRYSRLELVAELRHGDLFHSSNIVSSIEFDRDDELFAT
AGVSRRIKIFEFATVVNELADVHCPVAEMSTRSKLSCLSWNKYIKGQIASSDYEGTVTVW
DVNSCQSVMEYEEHERRAWSVDFSRTDPTMLVSGSDDGKVVKLWCTRQETSVLNIDMKAN
ICCVKYNPGSSNFVAVGSADHHIHYYDLRNSKSPLHVFSGHRKAVSYVKFVSPNELASAS
TDSTLRLWDVQKSSQIRSLTGHANEKNFVGLTVNSEYIACGSETNEVVVYHKEVPKPAAR
HRFTNHDSEESDDDVFHFISAVCWKSDSPTMLAANSQGTIKVLVLAP
NT seq 1944 nt   +upstreamnt  +downstreamnt
atgagtttctcgtccgagcagcaacagcagcaacagcagcagcaagggccgcggctgttg
gcggataaggatttccagtgcccgatttgcatccagacgatgaaggatgcgtttctcacg
gcttgcggccacagcttttgctacatgtgtatcatcacgcacctcaacaacaagaagaac
tgcccgtgctgtggagtctacctcactagcagtcagctttaccccaattttctattgaac
aaaatacttaagaaggttgctacgtcgcaaatctcgtgtgcgtccccgacagagcagctt
cgttttgctctacaacagggcgtcgacgttccactcaaagagatcgattcattgctggtt
ttgttgagcgataagaagcgaaaagccgagcacgaggaagccgaggtgaacatggaggtt
cttctcgagtttttgcagagatctaggcagcaaaagatggaagaactttctgagattcaa
ggggacttgcagtcgctgagggaggacatctctactgttgagatccagaggcaggagctg
ctcaaatcgagacaaacaagctcgctgaagtggcgctttcttcttgactgcccggctctc
gactgtccggctcaagagaacccgtacaaccgtcctgcggttcccttgcatcgtgtcggc
caagcaggggcagccttgctcggtggagaacaaaggaaagcaacgagaggtcctctcgtg
aagaagaatggtggcacttcaaatggtacctctgactttgaaccgctgccttgtaagacc
gcaaagaaaaagaggatgctaaaccagtttgaagacttgcaagattgttacttgaataag
agacgacgtgatcgtcagatgaaaaagtttgaagccattgttaaaaaggagaaagacgaa
gaagcctgtggtgggtttaatcaaccttcgggccttgaggactttagatccattctcgct
ggcttcaccagatatagtcgtttggagctggtggctgagctacgacacggagacttattt
cattcttctaacattgtttcaagtattgaatttgacagggacgacgaactatttgccact
gcaggagtttcgcggcgaatcaaaattttcgaatttgcaacggttgtcaacgagcttgca
gacgtccattgtcctgtcgccgagatgtctacgcggtcaaagctaagctgcctaagttgg
aacaagtacatcaagggacaaatcgcgagcagcgattatgaaggcactgtaactgtttgg
gatgtaaattcttgccagagtgtcatggagtacgaagagcacgagagaagagcctggagc
gtcgatttctccaggacggacccgacaatgctagtgtctgggagtgacgacggaaaggta
gtcaagctgtggtgcaccaggcaggagacaagtgtcctgaacattgacatgaaggcaaac
atttgctgtgtcaaatacaatcccggatctagcaattttgtcgcggtgggctcggccgat
catcatatccactattacgatctccggaactccaagtcgcctctacatgtctttagcggc
caccgaaaagccgtctcgtatgtaaagtttgtatcgcccaacgagttggcctcggcttcc
actgacagtacactgcgattgtgggacgtccagaagagctcccagatacgcagcctcaca
ggccatgctaacgagaagaactttgtaggcttgacagttaacagcgagtacattgcgtgc
ggtagtgaaacgaacgaagtcgtggtgtatcacaaagaagttcccaagccagcagcaagg
cacagattcacaaaccatgactcggaggagagcgacgacgatgtgttccacttcatcagt
gctgtgtgctggaagagcgatagcccaacgatgcttgcggcaaacagccaagggacgatc
aaggttctggtgcttgctccgtga

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