Selaginella moellendorffii: SELMODRAFT_424560
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Entry
SELMODRAFT_424560 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_424560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_424560
Enzymes [BR:
smo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SELMODRAFT_424560
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_424560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
9653351
NCBI-ProteinID:
XP_002985556
JGI:
424560
UniProt:
D8SQB1
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MAFVTRSNWEEALVEARAHIRQAAFVAVDLELTGVQTTPWRGATEVDNLHTRYLNLRDSA
EKFAMIQFGLCPVLWDAAGGKFIAYPYNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQ
FDFNACIYDGISYLSHEQEKLARHKLKLTDADGAPRELESFSALEIPLNRTADVIFSESV
RVQAGEWRDKVLQREKDAHEPEERLCLVVEVAGNHEANLVHQVLRKSFQDLVPFTEDGAK
KVKILFPRSVKERALLVGQWEKDRRSRLENQIMDAIGFRQLIDALVESKKPVVGHNCFLD
IAHIYNKFFATLPLSCSEFCSSIHQHFPCIFDTKYLLKADSAAQEMLGKGGTTLGPVFSN
VGKLPNKVQIEFGSSSLCRYDGTEMKHEAGYDAYMTAAVFANICQFMKMDPANLPSLCEQ
AKEGEEERSGLGSHANHLYLGWRGHFVLDLSTGQEATGPRSLKSSRSIEREKAKSVALMW
GSGSTRSLEVDSRSLEADVKACFTAKSPPHVEVVRIDESSAFVVFRRKESLESLVQAFEC
SGHHDKVGVCDVSGLVARGWKIARYEFFEKLCESPLSTAKLTDAVTSMHLQAESSSSRKR
PRL
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgtgacgcggagcaattgggaggaggcgctagtcgaggctagggctcacatc
cgccaggcggcatttgtggctgtggatctggagctgaccggcgtccagacgacgccatgg
cgcggcgccacagaggtggacaatctccacactcgctacctcaatcttcgcgactcggcc
gagaaatttgcgatgatccagtttggcctctgcccggtcttgtgggatgctgccggtggg
aaattcatcgcctatccctataacttttgtttgttcccgcgtcacgagctccaaatcgag
atgcccgcgagagatttcttgtgccaggcgacttcactcgagtttcttgcgaagcaccag
tttgatttcaatgcctgcatttacgacggaatttcttatctatctcacgagcaggagaaa
ctcgctagacataaactgaagttgacggatgcggatggagcaccacgcgagcttgagagc
ttctcggcactggagattccactcaatagaacagcggacgttatctttagcgagagcgtg
cgagtccaagccggggaatggcgtgacaaagtgctgcaaagagaaaaggatgctcacgaa
cctgaggagcggctgtgcctcgttgtggaagttgctggtaaccatgaagccaacctcgtt
caccaggttttgcgaaagagcttccaagatctcgttccttttacggaggatggtgcaaag
aaagtgaaaattctgtttcctcgatctgtgaaggagagggcgctcttagtgggtcaatgg
gaaaaggatagaaggtcgagattggaaaaccagatcatggatgcaataggatttcgtcaa
cttattgatgctctagtggagtcgaagaagccagtggtcggacacaattgctttcttgat
attgctcatatttacaacaaattcttcgcaactcttcctttgagctgctccgaattctgc
tcgtccatccaccagcatttcccttgcatcttcgacaccaagtacttgctgaaagcggac
tcggcggctcaagaaatgcttgggaaaggcggcacaaccttaggcccggtgttctcaaac
gtgggaaagctgccaaacaaagtccagatcgagtttggaagctccagcctttgcaggtac
gatgggacagagatgaagcacgaggccggctatgatgcttacatgacggcggcagtcttt
gccaacatctgccagtttatgaagatggatcccgcgaacttgccttcactctgcgagcaa
gcaaaagagggcgaggaagaaagatcaggccttgggagccacgcaaatcacttgtacctt
ggttggcgagggcactttgtcctcgatctttcgactggccaggaagcaactggtcccagg
tcactcaagtcttctcgatccatcgagcgtgagaaggccaagagtgtggcactgatgtgg
ggctccggttccactcgaagcttggaagttgacagtcgaagcttggaagctgacgtgaaa
gcctgctttaccgctaaatcaccaccgcatgtagaagtcgtgcgcatcgatgagagctcc
gcgtttgtggttttccggaggaaggagtccctagaatccctggtgcaagccttcgaatgc
tccggtcaccacgacaaggttggcgtgtgcgatgttagcggcctggttgcacgcggctgg
aagattgcccgatatgagttctttgagaagctttgcgagtcgccactgtcaacggcaaag
ctcacggacgcagtcacttcgatgcatcttcaagctgaaagtagtagctcgaggaagcga
ccgcgattatga
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