Selaginella moellendorffii: SELMODRAFT_440060
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Entry
SELMODRAFT_440060 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_440060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_440060
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SELMODRAFT_440060
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SELMODRAFT_440060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
DUF1686
Motif
Other DBs
NCBI-GeneID:
9630892
NCBI-ProteinID:
XP_002967862
JGI:
440060
UniProt:
D8R9T6
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MASQATAGDHAPGQELRDCLRRFDAVATSDPDTSEALLQLEGSLQAGLVLEELGHACSVD
ATHCKRLLSFFLPLNEKDVAQIIGLVSRTHLGVEDVHGAYATVFSVLCDSPSYVGDSPWL
STWNQDVLIDTLKELAPALDWRLVIENLDHEGFFVPDQQALSVLMSFFTRNSQDTFPIQA
VCGRIWKNTEGQLSFLRHAAVAPPEIFTFASSHRKQMLLEGYHRFAFGSPNHAWLSMDLL
ETLCRLAELGHGEAVRSLLEYPAKHCPELLLTGLAQLKTDWNLVQNEYFTPLFSAYLGIN
QHASLVMHQLWLLSRELMKKAMVEIHSKEPSAIGRILDVCQELKVLSEVLDGTPFQFSID
LAALAGRREFLNLEKWLHDNLVVYQEPLFQACLSFLRERLLVESFNGQSGTPRSGPIGLS
METTAIFFKVLQAFSAQLSSRELVEEMRRVHAAAIRANPRLLSGAGTEQSSSEAFSSDVE
EEANVYFQKIYKGQLTIENVVEMLERLNGSSVPREHEVFSCMIHSLFDEYRFFPRYPERE
LKITAVLFGKLISHQLVSSITLGVALRCVLDSLRKTPDSKMFSFGMTALEQFRSRLEEWP
QYCNHILQISHMRDGHMDLVDYIERSLARASSTQTDVLANPSSDQQNAQVQPELNLNPQQ
QEERSAGGTLVANKPLSQSVSSTAQLYEILKGQQKVAMNAQQSSSHFSKPARTMSVPVTG
RHVTTPGFGHALNIETLVAAAERRDPIENPSLETEDKVAFIINNISVANYEAKAKECLEV
LKDKYYPWFAQYMVMKRASIEPNFHDIYLKVLDKMNSRALDQEIVNATYQNCKVLLGSEL
IKSSSEERSLLKNLGSWLGKLTIGRNKVLKAKEIDPKTLITEAYERGLMIAVIPFTSKIL
EPCQTSQVYQPPNPWTMGILGLLSEIYALPNLKMNLKFDIEVLFKHLGVEMKDVKQTQLV
KGRMREVEGNPDFSNKELIAATHPPATTEHSIISNLNQVEFLPELPAHPVPHATATQLPV
HVSPNASQDEEKVLPFVGERVKAHSTAPSPFSSGQASTLSNLNVYVVLNNRLAGISQQHQ
QQMHRIIPLAMERAIREIIAPVVDRSVTIACMTTRELIQKDYALEADDNRTLHSSNLMVA
SLAGSLAHVTCKEPLRVAMASHIRNALQPSISSDVLEQTVHVVTNDNLDLGCAVIEKAAT
EKDFARLPWQTQASAASTRPNYPNVFPSHTSTAITQASDVNADEVDVRTQSPTSFPDGGA
RHQEVLSSDGTSALLPDGSGAELLKLHVPNILPGPTLPTEPPGPVSRPVKDDVKPIPRDT
DPVGLRDQIALLFDEWARVCNTPGANDKTYANFISQLTQSGFLKGDDVTDQFFRILTELA
VAHSLSVESSPIGTLNFAAVDLYAKLVVLLVKVLNVTVRVIQKDADEKKTSFQPRPYFRL
FLTWLMDFNAPDPSLDSSVYQILLSFTNALTMLQPLNTPGWSFVWLELISHRTFMPKQLL
VQQPKGWPNFQRLLVSLFRFMDPYLRSAELSDPIRLLYKGTLRVLLVLLHDFPEFLCDYH
FSFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISHPPRILSDVEAALKS
KQLKGDVDEYLKTRLSPPLFLVDLKQRLLLSQHESGLSGTRYNVPLINSLVLYVGMQAIQ
QLQAKTAPQIGVPTAPITHSAPMDIFQKLIVELDTEGRYLFLNAIANQLRYPNNHTHYFS
CVLLYLFAEASQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNHAFVRC
APEIDRLFESVARSCMGPPAKPTDEEINASLSAEAIKG
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgcaagctactgccggtgatcatgctccagggcaagagctcagagattgcctg
aggagatttgacgctgttgctaccagcgaccccgatacttcggaggcgctcttgcagcta
gagggctctttgcaagctgggctcgtattggaggagctcggccatgcatgctccgtggat
gccactcactgcaaaaggctactgtcgttcttccttcctctaaacgagaaggatgtagcg
cagataattgggctggtgtcgcgaactcatctcggagtcgaggacgtccatggagcttat
gccactgtcttctcggtgctctgcgacagcccctcctacgtaggtgattctccgtggttg
agtacatggaatcaggatgttctgatcgatactttgaaagagctggctcctgccctggac
tggcggctagtgatagagaatctcgatcatgaagggtttttcgttcccgaccaacaggct
ctgtcggttcttatgtcattctttacaaggaactctcaggatacgttccctatacaagct
gtttgcgggaggatttggaaaaatacagaaggacaactctcatttttacggcatgcagcc
gttgcgccacctgaaatttttacgttcgcaagctctcacagaaaacagatgctgctggaa
ggttaccataggtttgcgtttggtagtccaaaccatgcttggctatccatggatttactt
gaaacgctgtgccggctagcagagttaggccacggggaggccgttcgatctctgctagaa
taccctgcgaagcactgtccggagctgcttctcaccggattagcccagctgaagacggac
tggaaccttgttcaaaacgaatattttacgccgttgttttctgcgtatcttggcataaat
cagcatgcaagtctcgtaatgcatcaactatggcttttaagtagggagctaatgaaaaaa
gccatggtcgagatccactccaaagagccaagcgcaattggtcgtatcctagacgtttgt
caggagttaaaggttctttcggaagtgctcgatggtacaccttttcagttctctattgat
ctcgcagcgttagcaggaagaagagagttcctgaaccttgagaagtggttgcacgacaat
ctagtagtatatcaggaacccttgtttcaggcctgtttgagctttctgagggagagattg
ttagtggaaagttttaatggacagtcgggaactccccggagtggaccgattggactttct
atggaaacaacggcaatctttttcaaggtactccaagcattttcagcccagttatcttcg
agagaacttgtcgaagaaatgagacgtgtgcacgcggctgcaattcgtgcaaatccacgt
cttcttagcggtgcgggtactgagcagtcgtcgtctgaagcattttcaagtgatgttgaa
gaggaggcaaacgtttactttcagaagatatacaaaggccagcttaccatcgaaaacgtt
gtggagatgttagaaaggctcaatggatcttcagtaccaagggagcacgaagtattttca
tgtatgattcatagtctgtttgatgaatatcgcttctttccaagatacccggagcgagaa
ctcaaaattactgctgtgctatttggtaaacttataagtcatcagctggtgtcatcgatc
accttaggcgtcgccttacgttgcgttttagactccttgcgcaaaactcctgactcgaag
atgttttcatttggcatgactgcactggagcaattcagaagccggcttgaagaatggcca
cagtactgcaatcatatcttgcagatatctcacatgagagacggccatatggatcttgtt
gattatattgagcggtcgctggcacgcgcatcgtccacgcaaactgacgtcctagcaaat
ccttctagtgatcaacagaacgctcaagtgcagcctgagctgaacctgaatccgcagcag
caggaggagcgtagtgcaggtggtacgctggtggcgaacaaacctctttcacaatccgtt
tcctctaccgctcaactgtatgaaatactgaaggggcaacaaaaggtggctatgaatgct
caacaatctagttcgcacttctcgaaaccagcgagaactatgtcagttccagtcacaggc
cgacatgtaactactcctggatttggacatgcgttgaacattgagacactggtcgcagct
gccgaaaggagagatccaattgaaaatcccagccttgagacggaggacaaggttgccttt
attatcaacaatatatctgtagcgaattatgaagcgaaagcaaaggagtgcttagaagtt
ttgaaagacaaatactacccctggttcgctcaatatatggttatgaagagggcgagcatt
gaaccaaactttcatgatatttacctgaaggtcctcgataaaatgaattcaagagctttg
gatcaggaaattgtcaatgccacgtaccagaattgcaaggtgcttttgggatcggaactg
atcaagtcaagttcggaagagcgctcgcttttaaagaatttgggcagctggctgggaaaa
cttacaattgggcggaataaagttctgaaggccaaagaaattgacccgaaaacactgatt
acggaggcatatgagagggggctgatgattgctgttataccatttacttccaagattttg
gaaccatgccaaacaagtcaagtgtatcaacctcctaatccctggacaatgggtattctg
ggccttctatccgaaatttatgcgcttccgaacttaaagatgaacctgaaatttgacatt
gaggttcttttcaagcatcttggtgtcgaaatgaaggacgtaaagcaaacacaactagta
aaaggcagaatgcgtgaagttgaaggaaatcccgacttctccaataaagaacttattgct
gctacccatccaccagctaccacggagcatagcataatatctaacctcaatcaggtggag
tttctcccggagctgccggcacatccagttccccatgcgacggctactcagctacctgtt
catgtatctccaaatgcatcccaagatgaggaaaaggtcctgcctttcgttggagaacgt
gttaaagcgcattccactgccccatctccgttttcttcaggacaggcttcaactctttca
aatcttaatgtgtacgtggttcttaataatagactagcaggaataagtcagcaacaccaa
cagcaaatgcacagaattattcccttggcaatggaacgggctattagggagattattgcg
cctgtggttgatcgtagtgttaccatcgcttgcatgacgacgagggagctaatacagaag
gattatgcccttgaagcggacgacaatagaacgcttcattcgtcaaatctaatggttgcg
agtttggcgggaagtttggctcatgtgacgtgcaaggaacctcttcgtgttgcaatggca
agtcatattcgcaacgctctccagccgagtattagctctgacgtattagagcagactgtg
cacgtcgtgacgaacgacaatcttgatttaggctgtgcagttattgaaaaagccgcaaca
gagaaggatttcgctcgtctgccatggcaaacacaagcctcagctgcaagcactcgccca
aattatccgaacgtatttccttctcatacttctaccgctattacgcaagcgtcggatgtc
aatgctgacgaagtggatgttcgcacccagtcgccaacaagttttcctgacggaggagcc
cgacatcaagaagtattgtcaagtgatggaacttctgctttacttccagatggaagtggc
gcagagcttctaaagctccacgtccccaacattttgcctggaccaactttaccgacggaa
ccacccggacctgtaagtcggcctgtgaaagatgatgttaaacctattcctcgcgacact
gatccggttggacttcgtgatcagattgccctcctgttcgatgaatgggctcgggtgtgc
aataccccaggcgctaatgataaaacatatgcaaattttatatctcaacttacgcaatct
ggtttcctcaaaggcgatgatgtgacggatcaatttttcagaattcttactgagctagct
gtggcgcattcgctttctgtggaatcctctcctattggcactttaaattttgcggccgtt
gatttgtacgccaaacttgttgtgctccttgtgaaggttttgaacgtgactgtgcgcgtg
attcaaaaggacgctgacgagaagaaaacttcgtttcagccgcgtccttacttccgcttg
tttctaacatggctcatggattttaatgcgccagacccatcattggattctagcgtttat
cagattcttctttccttcaccaatgccctcacgatgttgcaacccctgaacacgccggga
tggagctttgtgtggttggagttgattagtcatcgtacctttatgccgaagcaactttta
gttcagcaaccgaaaggctggccgaattttcaacgcctccttgtatcgcttttcagattt
atggacccctacttgagaagtgcggaactcagtgacccgatcaggctgctgtacaaaggc
actttacgcgtgttgcttgtgctcctccacgacttcccagagttcctctgcgattatcat
ttcagcttctgcgacgtcattcccccgagctgtattcaaatgcgtaatctcatactgagc
gcattcccacgaaatatgcgactgccagatccatttactccaaacttgaaggtcgatttg
ttgccggaaataagccatcctcctcgcatactgtctgatgtggaagctgccttgaaaagc
aagcaactcaagggtgacgttgacgagtatttgaagacgcgcctgtcaccacccttgttt
cttgtcgatttgaagcagcggctgctattgtcacagcacgaatccggattgagtggaacg
cggtacaacgtccctctgataaactcgctggtgctctatgtgggaatgcaggcaatccaa
cagctacaggctaagaccgcccctcaaatcggtgtcccgaccgcgcctatcacgcacagc
gctcccatggacatattccagaagctgattgtagagcttgataccgagggccgctacttg
ttcctcaacgccatcgccaaccagctccgctatccaaacaaccatacgcattacttctcg
tgcgtgttgctctacttgttcgccgaagccagccaggagatcatccaagagcaaatcacg
agagttttgctggaaaggctcatcgtcaaccgtcctcatccgtggggtctgctcatcact
ttcatcgagctaatcaagaatccccgctacaacttttggaaccacgcattcgtgcgatgc
gctccggagatcgacaggctgtttgaatcggtcgcgagatcttgcatgggaccaccggcg
aagccgacggacgaggagatcaacgcgagcttgagcgccgaggcgatcaaaggctaa
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integrated database retrieval system
