Selaginella moellendorffii: SELMODRAFT_444949
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Entry
SELMODRAFT_444949 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_444949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_444949
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SELMODRAFT_444949
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SELMODRAFT_444949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
DUF1686
Motif
Other DBs
NCBI-GeneID:
9648316
NCBI-ProteinID:
XP_002981656
JGI:
444949
UniProt:
D8SEL9
LinkDB
All DBs
Position
Unknown
AA seq
1838 aa
AA seq
DB search
MASQATAGDHAPGQELRDCLRRFDAVATSDPDTSEALLQLEGSLQAGLVLEELGHACSVD
ATHCKRLLSFFLPLNEKDVAQIIGLVSRTHLGVEDVHGAYATVFSVLCDSPSYVGDSPWL
STWNQDVLIDTLKELAPALDWRLVIENLDHEGFFVPDQQALSVLMSFFTRNSQDTFPIQA
VCGRIWKNTEGQLSFLRHAAVAPPEIFTFASSHRKQMLLEGYHRFAFGSPNHAWLSMDLL
ETLCRLAELGHGEAVRSLLEYPAKHCPELLLTGLAQLKTDWNLVQNEYFTPLFSAYLGIN
QHASLVMHQLWLLSRELMKKAMVEIHSKEPSAIGRILDVCQELKVLSEVLDGTPFQFSID
LAALAGRREFLNLEKWLHDNLVVYQEPLFQACLSFLRERLLVESFNGQSGTPRSGPIGLS
METTAIFFKVLQAFSAQLSSRELVEEMRRVHAAAIRANPRLLSGAGTEQSSSEAFSSDVE
EEANVYFQKIYKGQLTIENVVEMLERLNGSSVPREHEVFSCMIHSLFDEYRFFPRYPERE
LKITAVLFGKLISHQLVSSITLGVALRCVLDSLRKPPDSKMFSFGMTALEQFRSRLEEWP
QYCNHILQISHMRDGHMDLVDYIERSLARASSTQTDVLANPSSDQQNAHVQPELNLNPQQ
QEERSAGGTLVANKPLSQSVSSTAQLYEILKGQQKVAMNAQQSSSHFSKPARTMSVPVTG
RHVTTPGFGHALNIETLVAAAERRDPIENPSLETEDKVAFIINNISVANYEAKAKECLEV
LKDKYYPWFAQYMVMKRASIEPNFHDIYLKFLDKMNSRALDQEIVNATYQNCKVLLGSEL
IKSSSEERSLLKNLGSWLGKLTIGRNKVLKAKEIDPKTLITEAYERGLMIAVIPFTSKIL
EPCQTSQVYQPPNPWTMGILGLLSEIYALPNLKMNLKFDIEVLFKHLGVEMKDVKQTQLV
KGRMREVEGNPDFSNKELIAATHPPATTEHSIISNLNQVEFLPELPAHPVPHATGTQLPV
HVSPNASQDEEKVLPFVGERVKAHSAAPSPFSSGQASTLSNLNVYVVLNNRLAGISQQHQ
QQMHRIIPLAMERAIREIIAPVVDRSVTIACMTTRELIQKDYALEADDNRTLHSSNLMVA
SLAGSLAHVTCKEPLRVAMASHIRNALQPSISSDVLEQTVHVVTNDNLDLGCAVIEKAAT
EKDFARLPWQTQASAASTRPNYPNVFPSHTSTAITQASDVNADEVDVRTQSPTSFPDGGA
RHQEVLSSDGTSALLPDGSGAELLKLHVPNILPGPTLPTEPPGPVSRPVKDDVKPIPRDT
DPVGLRDQIALLFDEWARVCNTPGANDKTYANFISQLTQSGFLKGDDVTDQFFRILTELA
VAHSLSVESSPIGTLNFAAVDLYAKLVVLLVKVLNVTVRVIQKDADEKKTSFQPRPYFRL
FLTWLMDFNAPDPSLDSSVYQILLSFTNALTMLQPLNTPGWSFVWLELISHRTFMPKQLL
VQQPKGWPNFQRLLVSLFRFMDPYLRSAELSDPIRLLYKGTLRVLLVLLHDFPEFLCDYH
FSFCDVIPPSCIQMRNLILSAFPRNMRLPDPFTPNLKVDLLPEISHPPRILSDVEAALKS
KQLKGDVDEYLKTRLSPPLFLVDLKQRLLLSQHESGLSGTRYNVPLINSLVLYVGMQAIQ
QLQAKTAPQIGVPTAPITHSAPMDIFQKLIVELDTEGRYLFLNAIANQLRYPNNHTHYFS
CVLLYLFAEASQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNHAFVRC
APEIDRLFESVARSCMGPPAKPTDEEINASLSAEAIKG
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgcaagctactgccggtgatcatgctccagggcaagagctcagagattgcctg
aggagatttgacgctgttgctaccagcgaccccgatacttcggaggcgctcttgcagcta
gagggctctttgcaagccgggctcgtattggaggagctcggccatgcatgctccgtggat
gccactcactgcaaaaggctactgtcgttcttccttcctctaaacgagaaggatgtagcg
cagatcattgggctggtgtcgcgaactcatctcggagtcgaggacgtccatggagcttat
gccactgtcttctcggtgctctgcgacagcccctcctacgtaggtgattctccgtggttg
agtacatggaatcaggatgttctgatcgatactttgaaggagttggctcctgctctggac
tggcgtctagtgatagagaatctcgatcatgaagggtttttcgttcccgaccaacaggct
ctgtcggttcttatgtcattctttacaaggaactctcaggatacgttccctatacaagct
gtttgcgggagaatttggaaaaatacagaaggacaactctcatttttacggcatgcagct
gttgcgccacctgaaatttttacgttcgcaagctctcacagaaaacagatgctgctggaa
ggttaccataggtttgcgtttggtagtccaaaccatgcttggctatccatggatttactt
gaaacgctgtgccggctagcagagttaggccacggggaggccgttcgatctctgctagaa
taccccgcgaagcactgtccggagctgcttctcaccggattagcccagctgaagacggac
tggaaccttgttcaaaacgaatattttacgccgttgttttctgcgtatcttggcataaat
cagcatgcaagtctcgtaatgcatcaactatggcttttaagtagggagctaatgaaaaaa
gccatggtcgagatccactccaaagagccaagcgcaattggtcgtattctagacgtttgt
caggagttaaaggttctttcggaagtgctcgatggtacaccttttcagttctctattgat
ctcgcagcgttagcaggaagaagagagttcctgaaccttgagaagtggttgcacgacaat
ctagtagtatatcaggaacccttgtttcaggcctgtttgagctttctgagggagagattg
ttagtggaaagttttaatggacagtcgggaactccccggagtggaccgattggactttct
atggaaacaacggcaatctttttcaaggtactccaagcattttcagcgcagttatcttcg
agagaacttgtcgaagaaatgagacgtgtgcacgcggctgcaattcgtgcaaatccacgt
cttcttagcggtgcgggtaccgagcagtcgtcgtctgaagcattttcaagtgatgttgaa
gaggaggcaaacgtatactttcagaagatatacaaaggccagcttaccattgaaaacgtt
gtggagatgttagaaaggctcaatggatcttcagtaccaagggagcacgaagtattttca
tgtatgattcatagtctgtttgatgaatatcgcttctttccaagatacccggagcgagaa
ctcaaaattactgctgtgctatttggtaaacttataagtcatcagctggtgtcatcgatc
accttaggcgtcgccttacgttgcgttttagactccttgcgcaaacctcctgactcgaag
atgttttcatttggcatgactgcactggagcaattcagaagccggcttgaagaatggcca
cagtactgcaatcatatcttgcagatatctcacatgagagacggccatatggatcttgtt
gattatattgagcgctcgctggcacgcgcatcgtccacgcaaactgacgtcctagcaaat
ccttctagtgatcaacagaacgctcatgtgcagcctgagctgaacctgaatccgcagcag
caggaggagcgtagtgcaggtggtacgctggtggcgaacaaacctctttcacaatccgtt
tcctctaccgctcaactgtatgaaatactgaaggggcaacaaaaggtggctatgaatgct
caacaatctagttcgcacttctcaaaaccagcgagaactatgtcagttccagtcacaggc
cgacatgtaactactcctggatttggacatgcgttgaacattgagacactggtcgcagct
gccgaaaggagagatccgattgaaaatcccagccttgagacggaggacaaggttgccttt
attatcaacaatatatctgtagcgaattatgaagcgaaagcaaaggagtgcttagaagtt
ttgaaagacaaatactacccctggttcgctcaatatatggttatgaagagggcgagcatt
gaaccaaactttcatgatatttacctaaagttcctcgataaaatgaattcaagagctttg
gatcaggaaattgtcaatgccacgtaccagaattgcaaggtgcttttgggatcggaactg
atcaagtcaagttcggaagagcgctcgcttttaaagaatttgggcagctggctgggaaaa
cttacaattgggcggaataaagttctgaaagccaaagaaattgacccgaaaacactgatt
acggaggcatatgagagggggctgatgattgctgttataccatttacttccaagattttg
gaaccatgccaaacaagtcaagtgtatcaacctcctaatccctggacaatgggcattctg
ggccttctatccgaaatttatgcgcttccgaacttaaagatgaacctgaaatttgacatt
gaggttcttttcaagcaccttggtgtcgaaatgaaggacgtaaagcaaacacaactagta
aaaggcagaatgcgtgaagttgaaggaaatcccgacttctccaataaagaacttattgcc
gctacccatccaccagctaccacggagcatagcataatatctaacctcaatcaggtggag
tttcttccggagctgccggcacatccagttccccatgcgacgggtactcagctacctgtt
catgtatctccaaatgcatcccaagatgaagaaaaggtcctgcctttcgttggagaacgt
gttaaagcgcattccgctgccccatctccgttttcttcaggacaggcttcaactctttca
aatcttaatgtgtacgtggttcttaataatagactagcaggaataagtcagcaacaccaa
cagcaaatgcacagaattattcccttggcaatggaacgggctattagggagattattgcc
cctgtggttgatcgtagtgttaccatcgcttgcatgacgacgagggagctaatacagaag
gattatgcccttgaagcggacgacaatagaacgcttcattcgtcaaatctaatggttgcg
agtttggcgggaagtttggctcatgtgacgtgcaaggaacctcttcgtgttgcaatggca
agtcatattcgcaacgctctccagccgagtattagctcggacgtattggagcagactgtg
cacgtcgtgacgaacgacaatcttgatttaggctgtgcagttattgaaaaagccgcaaca
gagaaggatttcgctcgtctgccatggcaaacacaagcctcagctgcaagcactcgccca
aattatccgaacgtatttccttctcatacttctaccgctattacgcaagcgtcggatgtc
aatgctgacgaagtggatgttcgcacccagtcgccaacaagttttcctgacggaggagcc
cgacatcaagaagtattgtcaagtgatggaacttctgctttacttccagatggaagtggc
gcagagcttctgaagctccacgtccccaacattttgcctggaccaactttaccgacggaa
ccacccggacctgtaagtcggcctgtgaaagatgatgttaaacctattcctcgcgacact
gatccggttggacttcgtgatcagattgccctcctgttcgatgaatgggctcgggtgtgc
aataccccaggcgctaatgataaaacatatgcaaattttatatctcaacttacgcaatct
ggtttcctcaaaggcgatgatgtgacggatcaatttttcagaattcttactgagctagct
gtggcgcattcgctttctgtggaatcctctcctattggcactttaaattttgcggccgtt
gatttgtacgccaaacttgttgtgctccttgtgaaggttttgaacgtgactgtgcgcgtg
attcaaaaggacgctgacgagaagaaaacttcgtttcagccgcgtccttacttccgcttg
tttctaacatggctcatggattttaatgcgccagacccatcattggattctagcgtttat
cagattcttctttccttcaccaatgccctcacgatgttgcaacccctgaacacgccggga
tggagctttgtgtggttggagttgattagtcatcgtacctttatgccgaagcaactttta
gttcagcaaccgaaaggctggccgaattttcaacgcctccttgtatcgcttttcagattt
atggacccctacttgagaagtgcggaactcagtgacccgatcaggctgctgtacaaaggc
actttacgcgtgttgcttgtgctcctccacgacttcccagagttcctctgcgattatcat
ttcagcttctgcgacgtcattcccccgagctgtattcaaatgcgtaatctcatactgagc
gcattcccacgaaatatgcgactgccagatccatttactccaaacttgaaggtcgatttg
ttgccggaaataagccatcctcctcgcatactgtctgatgtggaagctgccttgaaaagc
aagcaactcaagggtgacgttgacgagtatttgaagacgcgcctgtcaccacccttgttt
cttgtcgatttgaagcagcggctgctattgtcacagcacgaatccggattgagtggaacg
cggtacaacgtccctctgataaactcgctggtgctctatgtgggaatgcaggcaatccaa
cagctacaggcaaagaccgccccgcaaatcggtgtcccgaccgcgcctatcacgcacagc
gctcccatggacatattccagaagctgattgtagagcttgataccgagggccgctacttg
ttcctcaacgccatcgccaaccagctccgctatccaaacaaccatacgcattacttctcg
tgcgtgttgctctacttgttcgccgaagccagccaggagatcatccaagagcaaatcacg
agagttttgctggaaaggctcatcgtcaaccgtcctcatccgtggggtctgctcatcact
ttcatcgagctaatcaagaatccccgctacaacttttggaaccacgcattcgtgcgatgc
gctccggagatcgacaggctgtttgaatcggtcgcgagatcttgcatgggaccaccggcg
aagccgacggacgaggagatcaacgcgagcttgagcgccgaggcgatcaaaggctaa
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