Selaginella moellendorffii: SELMODRAFT_89021
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Entry
SELMODRAFT_89021 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SELMODRAFT_89021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_89021
Enzymes [BR:
smo01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
SELMODRAFT_89021
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
SELMODRAFT_89021
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
SELMODRAFT_89021
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
SELMODRAFT_89021
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
SELMODRAFT_89021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
zf-C2HE
Macro
AAA_33
HIT
AAA_22
KTI12
AAA_18
AAA_16
NPHP3_N
AAA_17
Motif
Other DBs
NCBI-GeneID:
9650544
NCBI-ProteinID:
XP_002968320
JGI:
89021
UniProt:
D8RBW2
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
VVVVLVGVPGSGKSRFCSSVIENASQTWTRICQDIIANGKRGTKAQCIKQATIALNSSSS
VFIDRTNLNREQRLEFIEFAKKHGVEAHGVVLNLPVGTCITRAMNRTSHEGGLEGKKVGA
VIQRMAHGVELPALEEGFSRITVCRTDGDADECIATYRSLSSSSKLPTGVFDRNSSSTTK
GSLEQFLNKPGGGQKKAGQASSSAASTKKAVESAAPELKDGDGSMPQASEESCATLAFPS
ISTADFRFDHEKAANIIVETVSEFFSRAESSGLRLVLVDIDQGSDMLSRVRSRAESAGLD
SRKFLVTHGDITKLHSTGGPRCSVIANAANWRLKGGGGGVNLAIYRAAGDDFEEATKKYA
KTLDPGKVVAVPLPASSPLRTKEGVTHVIHVLGPNMNPQRPNCIADDYSQGCRLLRQCYA
ALFSTFASIAKGQVSKAKVTASPASNSSSPGSSKKGKAEVGKVTGEEGNPASGTGTLKAA
VEEKAATKKPVNWPAWAQALHDVAFHPEKHSNVVLEVTDDCVVLPDLYAKAKKHLLVVSR
KAGLDSIADVTKEHLPLLREMHAVGERWAKKLVEEDNSLVFRLGYHSVPSMRQVHLHVIS
QDFNSPGLKNKKHWNSFTTSFFRDSRDVIAELESRGKLEECTEEMEKRLLDSELRCHRCR
CVQPNIPRLKAHVCSCSKPLLLKSLISSP
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
gtggtagtggtgctggtcggggttccagggagtggaaaaagccggttttgttccagcgtc
atcgagaatgcttcacagacttggaccaggatttgtcaggatatcatcgccaatgggaag
cgagggacgaaagctcagtgtatcaaacaagccaccatcgccctcaattcctccagcagc
gtcttcatcgatcgaaccaatctcaaccgcgagcagcggctggaattcatcgagtttgcg
aagaaacacggtgtggaggcccatggcgtggtgctcaacttaccggttgggacgtgtatc
actcgggccatgaatcggacttctcacgaggggggactggaaggaaagaaggtcggggct
gttattcaaaggatggctcacggtgtggagcttccagcactggaggaaggattcagcaga
atcacggtgtgtagaacagatggtgacgccgacgaatgtatcgcgacgtacagatctttg
agctcgtcatcaaagctgccaacgggagtttttgatcgaaattccagcagcacgacgaag
ggatcgctggaacagtttctaaacaagccgggtggtggtcagaaaaaggcgggccaagca
agcagcagtgctgcgagcacgaagaaagcagtggaaagcgctgctccagaacttaaagat
ggtgatggatcgatgccgcaagcttctgaagaaagctgcgcaactcttgcgtttccgtca
atctctacagcagatttccgctttgatcacgagaaagctgcaaatatcattgttgagaca
gtgtcagagttcttcagccgtgcggagagcagtggtttgaggctggtgctggtggatata
gaccaagggtcggacatgctctcccgtgttcgaagcagggccgagtccgccggcttggac
agccggaagttcttagtgacccatggagacatcacaaagctccattccaccggaggccct
cgttgctcagtcattgctaacgccgcaaactggcgcctcaagggtggtggtggcggcgtg
aatcttgcaatctacagagctgctggtgacgattttgaggaagcaacgaaaaaatatgcg
aaaactttggatccaggaaaggtggtggccgttccactgcctgcctcgtctcctctacgc
acgaaggaaggggtaactcacgtcattcacgtccttgggcccaacatgaacccacagagg
ccaaactgcatcgccgacgactactcccagggctgtaggctgctgcgacaatgttacgct
gctctcttctcgactttcgcgtccattgcaaaaggccaagtttccaaagccaaagtaact
gcgtctcctgccagcaacagcagctcccctggttcttcgaagaagggtaaggctgaggtg
ggaaaagttacaggggaagaaggcaaccccgcgagcggaactggaactctaaaggcagcg
gtcgaagaaaaagccgctaccaagaagccagtgaactggcctgcgtgggctcaagctctg
cacgacgtagcgtttcatcctgagaagcacagcaatgtggtactggaggtgaccgacgat
tgtgttgttctgcctgatctctacgcaaaggcaaagaagcatcttctagtggtgtcgcga
aaggctggattggactccatagccgacgttactaaggagcaccttccgctcctccgcgag
atgcatgctgttggcgagcgctgggctaagaaactcgtggaagaagacaactctctcgtt
ttccggcttggctaccactcggtaccatcaatgcggcaggtccatcttcacgtcatcagc
caggacttcaactccccggggctcaagaacaagaagcattggaactcgttcacgacgagc
ttcttccgggactcgcgggacgtgatcgcggagctagagagccgcgggaagctcgaggag
tgcacggaggagatggaaaagaggctgctggattccgagctgcgctgccatcgctgccgt
tgcgtccagccaaacattccgcgcttaaaggcccatgtttgctcgtgctccaagccattg
cttctcaagtctctcatctcttcgccttag
DBGET
integrated database retrieval system
