Streptomyces moderatus: POD33_16425
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Entry
POD33_16425 CDS
T10886
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smod Streptomyces moderatus
Pathway
smod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
POD33_16425 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smod03021
]
POD33_16425 (rpoB)
03400 DNA repair and recombination proteins [BR:
smod03400
]
POD33_16425 (rpoB)
Enzymes [BR:
smod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
POD33_16425 (rpoB)
Transcription machinery [BR:
smod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
POD33_16425 (rpoB)
DNA repair and recombination proteins [BR:
smod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
POD33_16425 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WCH93617
LinkDB
All DBs
Position
3588313..3591798
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRNASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNTAWQSRVEA
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTHKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKVIPSRGAWLELEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGAEAPLDAGVLTVEDVISTIKYLVKLHAGETETAADNGQTIVVETDDIDHFG
NRRLRSVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRKVVDGQVTDEVDYLTADEEDRFVIAQANATLNDDMRF
TENRVLVRRRGGEVDYVAGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSESPLVGTGMEYRSAVDAGDVVKAEKAGVVQEVSADYITTANDDGTYITYRLAK
FARSNQGTSVNQKVIVNEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLGEEWAQRLQAIGADSVQPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPTGKARLFDGRSGEPFPDPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttcccaacctgctcgcgctg
cagaccgagagctttgactggctgctcgggaacaccgcctggcagagtcgggtcgaggcg
gctctggagtccggtcaggacgtccccaccaagtccggtctcgaggagatcttcgaggag
atctccccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgtttc
gagccgccgaagaacagcatcgacgagtgcaaggaccgtgacttcacgtacgcggccccg
ctcttcgtgacggccgagttcaccaacaacgagaccggcgagatcaagtctcagacggtc
ttcatgggcgacttcccgctcatgacgcacaagggcacgttcgtcatcaacggcaccgag
cgtgtcgtggtgtcgcagctcgtccgttcgcccggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctcggccaaggtcatcccgtcccggggcgcctggctg
gagctggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgcaagcgcaagcag
tccgtgaccgttctgctcaaggctctcggttggacgaccgagcagatcctggaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccgcccacgcgtgaggccgcg
cagacgctcctcgagaacctgtacttcaaccccaagcgttacgacctcgccaaggtcggc
cgctacaaggtcaacaagaagctgggtgcggaggctccgctcgacgcgggcgtcctgacc
gtcgaggacgtcatctcgacgatcaagtacctggtcaagctgcacgccggtgagaccgag
acggccgccgacaacggccagacgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgtcgtctgcgcagcgtcggcgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtccgtgagcgcatgacgactcaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctcacccacaagcgccgt
ctgtcggctcttggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgtgac
gtgcacccgtctcactacggccgtatgtgcccgatcgagacgcccgaaggccccaacatc
ggtctgatcggttcgctcgcctcctacggccgcgtcaacgcgttcggtttcgtggagacg
ccgtaccgcaaggtcgtcgacggtcaggtcaccgacgaggtcgactacctgacggccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgccacgctcaacgacgacatgcgcttc
accgagaaccgcgtcctggtccgccgtcgtggcggcgaggtcgactacgtcgccggtgac
gacgtggactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgccatgatc
ccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gccgtgcccctcatcaagtccgagtccccgctcgtcggcaccggcatggagtaccgctcc
gccgtcgacgccggcgacgtggtcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacatcaccaccgccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttcgcccgctccaaccagggcacctcggtcaaccagaaggtcatcgtcaacgagggcgac
cggatcatcgagggccaggttctggccgacggtccggccaccgagaacggcgagatggcg
ctgggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccggatcggtgcc
gaggtcgtcgccggagacatccttgtcggcaaggtcacgcccaagggcgagaccgagctg
acgccggaggagcgcctgctgcgcgcgatcttcggtgagaaggcccgtgaggtccgggac
acctcgctgaaggtgccgcacggcgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgtgaggagggcgacgagcttccccccggtgtgaaccagctggtgcgcgtgtacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggtgtc
atctccaagatcctgccgatcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtgccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcggcgaggagtgggcg
cagcgcctccaggcgatcggcgccgacagcgtccagcccggcaccaacgtcgccaccccg
gtcttcgacggtgcgcgtgaggacgagctcgcgggtctgctccagcacaccatccccaac
cgcgacggcgagcgcatggtgctcccgaccggtaaggcgcggctcttcgacggtcgctcg
ggtgagcctttcccggacccgatctccgtcggctacatgtacatcctgaagctgcaccac
ctggtcgacgacaagctgcacgcccgctcgaccggtccgtacagcatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
ctcgaggcttacggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgac
gtcaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtcgctctgcctgaacgtg
gaggtgctgtccagcgacggtatgtccatcgagatgcgtgacaccgacgaggacgtcttc
cgcgctgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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