Spiroplasma monobiae: SMONO_v1c00450
Help
Entry
SMONO_v1c00450 CDS
T06543
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smoo
Spiroplasma monobiae
Pathway
smoo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smoo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMONO_v1c00450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smoo03021
]
SMONO_v1c00450 (rpoC)
03400 DNA repair and recombination proteins [BR:
smoo03400
]
SMONO_v1c00450 (rpoC)
Enzymes [BR:
smoo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMONO_v1c00450 (rpoC)
Transcription machinery [BR:
smoo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMONO_v1c00450 (rpoC)
DNA repair and recombination proteins [BR:
smoo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMONO_v1c00450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Exog_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AUM62298
UniProt:
A0A2K9LT87
LinkDB
All DBs
Position
44453..48202
Genome browser
AA seq
1249 aa
AA seq
DB search
MKNSNKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTRNYECT
CGKYKKVKNKGKICERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLK
TKEVEEVVYFVSYIVLDPGNSKHLKKGMVLDLGNAKSSAKTREKLLKTLEDIRAGIEPDS
FAWKRADNLINQLRTPSTPFSMDEASTFISRYINAKFGIGASAIEDLLKNIELDKEIEKI
REDLKEKKGSSEQNKLMKRLEVLDSLKKSQSRPEWMVLHVIPVIPPDIRPIIQLDGGRFT
TSEINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDK
RPLKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFI
IKRLQEKDLAENVKVAEKMILTNDAKVWDILEEVIKDRPVLLNRAPTLHRLGIQAFEPKL
VKGKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVT
PTQDMILGNYYITTEEKGVEGEGTLFANYQEVKIAYETNSVSLNAIVAMPVSELKNKKIS
DKHKDKFLITTVGKIFFNQMFVEEFPWISNSNINNAEDEIEKFIVDGNTDIRSYIMNEYE
AQQPIKKKELSSIIERYFKLYGAQKTAQMLDNMKDLGFKFSSKSGTTISAADVVAYTEKF
DEFKVADEKVAQITEFYNMGMLTRTEKKRRVINVWSQVKDKIQNRLEDVLKKDPKNPVFV
MADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGARKGMA
DVALKTADSGYLTRRLVDISQEIIVTEEDCKTTKGFDVHSIIETKHDNIIVPLKDRLVGR
FTFNDVVDAKGKTIVEANTLITLALADDIINAGVEEVQIRTVLTCDTNRGVCRKCYGVNL
ATGEIVTIGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVTNPK
GSIAIISQIDGVVKEAKEEEGIITIVVSSDQDERKYKSQYGAILRVAEGEVVTRGQKLTE
GAINIKELLEVARIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKIIDSGET
ELLPGEVISSRTFRTEVKNAIMAGKKPPLAKHVIFGIKKAPLESDSWLSSASFQDTARVL
VKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIKKGKETYDSEY
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaattcaaacaaaagaatgattaaaatcgaactagcttctccagacgtaatcaga
agctgatcacgtggtgaagttacaaaaccagaaacaattaactacaaaacattaaaaaca
gaaaaagaaggtctattcgacgaaagaatttttggaccaactagaaactatgaatgtact
tgtggtaaatataaaaaagtaaaaaacaaaggaaaaatttgtgaacgttgtggtgtagaa
attacagaatcaatcgttagacgtgaaagaatgggtcacattgagttagaagaaccagtt
actcatatctgaatgttaaaagtagctccttcaagaattgcttcaattttagatttaaaa
actaaagaagttgaagaagttgtttactttgtaagttacatcgttttagatccagggaac
tcaaaacaccttaaaaaaggtatggttttagaccttggtaatgctaaatcaagtgcaaaa
acaagagaaaaattattaaaaactcttgaagatataagagctggaattgaaccagactca
tttgcatgaaaaagagcagataacttaattaatcaattaagaactccaagtactccattc
tcaatggatgaagcatcaactttcatttcaagatacatcaatgctaaatttggaatcgga
gcaagcgctatcgaagacttattaaaaaacattgaattagataaagaaattgaaaaaata
agagaagacttaaaagagaaaaaaggttcatctgaacaaaataaactaatgaaacgtctt
gaagtattagattcattaaaaaaatctcaatcaagaccagaatgaatggtattacatgta
attccagtaattccaccagacattagaccaatcatccaattggatgggggtagatttact
acttcagaaattaacgacttatatagaagaatcattattagaaatgaacgtctaaaaaaa
gttaaatcaatgggtgcaccaagtattattgttaacaacgaaaaacgtatgttacaagaa
gctgttgatgcattattagacaatgaacgtaaaccaagaccagttactggtaaagacaaa
cgtccattaaaatcattaacatcaatcttaaagggaaaacaaggaagattccgtcaaaac
cttttaggaaaacgtgttgactactcaggtcgttcggttattgctattggaccagactta
aaaatgtaccaagcaggtatcccaagagatatggctattacattatttaaaccatttatc
attaagagattacaagaaaaagatcttgccgaaaacgtaaaagtagcagaaaaaatgatt
ttaacaaacgatgctaaagtttgagatatcttagaagaagttattaaagatagaccggta
ttattaaaccgtgctcctacacttcaccgtttaggtattcaagcattcgagccaaaacta
gttaaaggtaaagcaattagacttcacccattagtaactacagctttcaacgccgacttc
gacggggaccaaatggctgttcacttaccaattagtgatgaagctgttgccgaagcaaga
gcgcttatgttaggttcaaaagcgattcttggaccaaaagatggtaaacctatcgttact
cctactcaagatatgattttaggaaactattacatcaccactgaggaaaaaggtgttgaa
ggtgaaggtacattatttgcgaactatcaagaagtgaaaattgcttatgaaactaactca
gtttcattaaatgcaattgttgcaatgccagttagcgaattaaaaaacaaaaaaatatct
gataaacacaaagataaattcttaattacaacagttggtaaaatattctttaaccaaatg
tttgttgaagaattcccatgaatttctaattcaaacattaataatgcggaagatgaaatt
gaaaaattcatagttgatggaaacactgatatcagaagttacatcatgaatgaatatgaa
gctcaacaaccaattaagaaaaaggaactatcatcaattattgaaagatacttcaaatta
tatggggcacaaaaaactgctcaaatgttagataacatgaaggacttaggattcaaattt
tcttcaaaatcaggaacaacaatcagtgcagctgacgttgttgcttatacagaaaaattt
gatgagttcaaagttgcagatgaaaaagtggcacaaatcactgaattctacaacatgggt
atgttaacaagaactgagaaaaaacgccgtgtaattaacgtttgatcacaagttaaggat
aaaatccaaaacagacttgaagatgttcttaaaaaggacccaaaaaaccctgtatttgtt
atggctgattcaggagctcgtggtaacgtatctaacttcacacagttggtaggtatgagg
ggacttatgaatgaccctaaaggggacattaaagaaattccaattaaatcatcattccgt
gaaggactaactgtttcagaatactttatttctacccacggggcaagaaaaggtatggct
gacgttgccttaaaaacagccgattcaggttacttgacaagaagacttgttgatatttca
caagaaatcattgttactgaagaagactgtaaaacaacaaaaggtttcgatgttcactca
attatagaaacaaaacacgataacataatcgtgcctttaaaagacagattagttggaaga
ttcactttcaatgacgttgttgatgcaaaaggaaaaacaatcgttgaagctaacacttta
attacattagcattagcagatgatattattaatgctggagttgaggaagttcaaattaga
actgtactaacatgtgacacaaaccgtggtgtatgtagaaaatgttatggtgttaactta
gcaactggagaaatcgttacaatcggtgaaccagttggggttattgccgctcaatcaatt
ggtgaacctggtactcagctaactatgcgtactttccataccggaggggttgctggggga
gcagatattacacaaggtttacctcgtattaaagaattacttgacgttacaaaccctaaa
ggttcaattgctataatttcacaaatcgatggagttgtaaaagaagcaaaagaagaagaa
ggaataattacaattgtcgtttcatctgatcaagatgaaagaaaatacaaatcacaatac
ggagctattttaagagtagcggaaggtgaagttgtaactcgtggtcaaaaattaactgaa
ggtgcaataaacattaaagaattattagaagttgcaagaattgaagacgtacaaaactat
atcttaaaagaagtacaaaaagtttatcgtctacaagggattgaaatttcagataagtat
attgaaattattgttaaacaaatgttgaataaagttaaaattattgactcaggagaaacc
gaattacttccaggagaagttatttcatctagaacattcagaacagaagtgaaaaatgca
attatggcaggtaaaaaacctcctcttgcaaaacacgttatctttggtattaaaaaagca
ccacttgaatcagattcatgattatcaagtgcatcattccaggatacagcaagagttctt
gtaaaagcagttatcaaaggaaaagttgataaacttgaaggattaaaagaaaacattatg
ttaggaaacttaatcccagcaggaactggattaactggtagtgcagatattatcaaaaaa
ggtaaagaaacttacgattcagaatactag
DBGET
integrated database retrieval system
