Sordaria macrospora: 10807899
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Entry
10807899 CDS
T01610
Symbol
SMAC4_02058
Name
(RefSeq) uncharacterized protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
smp
Sordaria macrospora
Pathway
smp03040
Spliceosome
smp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
10807899 (SMAC4_02058)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
10807899 (SMAC4_02058)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smp03041
]
10807899 (SMAC4_02058)
04121 Ubiquitin system [BR:
smp04121
]
10807899 (SMAC4_02058)
03400 DNA repair and recombination proteins [BR:
smp03400
]
10807899 (SMAC4_02058)
Enzymes [BR:
smp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
10807899 (SMAC4_02058)
Spliceosome [BR:
smp03041
]
Complex B
Other components
Prp19 complex
10807899 (SMAC4_02058)
Complex C
Prp19-CDC5 complex
10807899 (SMAC4_02058)
Ubiquitin system [BR:
smp04121
]
Ubiquitin ligases (E3)
U-box type E3
10807899 (SMAC4_02058)
DNA repair and recombination proteins [BR:
smp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
10807899 (SMAC4_02058)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
Beta-prop_THOC3
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WDR55
Beta-prop_WDR19_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
WD40_RFWD3
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_Vps41
B-prop_COPA_B_2nd
eIF2A
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR35_TULP_N
zf-Nse
V_ATPase_I_N
Beta-prop_HPS5
Fim-adh_lectin
Cytochrom_D1
WDR90_beta-prop_4th
Hemerythrin
Motif
Other DBs
NCBI-GeneID:
10807899
NCBI-ProteinID:
XP_003350345
UniProt:
F7W0U8
LinkDB
All DBs
Position
4:complement(join(4576444..4576922,4576988..4577445,4577503..4577953,4578091..4578135,4578192..4578204))
Genome browser
AA seq
481 aa
AA seq
DB search
MLCALSGEVPEEPVVSRKTGAVFEKRLIEKYIQENHKEPGTDEELDVEDLLPIKTNRIVR
PRPPQFTSLPSMLKAFQDEWDALVLESYNTRQQLARTREELATALYQNDAAVRVIARLTK
ERDEAREALSRLTVTASAGGAATGGDDAMAVDSEGLPEALAAHVDQVQAEKQKGRKKRPV
PEGWASTEDVSALQQTAYTDLPVTQATSLALNAGYAAVGGLDGKVDLYSVEAKAHERSLE
IGEPVTATVWIGNKVVSATSRGSVKAVEGGVETGSITEHAGAVTGLAVHPGEHILASVGV
DKGIIFYDLQSLQRVARVYTDAELTSCAFHPDGHLFAAGTQSGLIEIFDTKTLQRMANFT
LGSPVKTLVFSENGFWFAATGVGQSSVTVFDLRKEGDAARAKELQTGDVLGLAWDYTGQY
LATAGSQGVTVQQYVKASKSWTEPLRTSTPAVAVQWGDKARQLVAVSKEGVVSVLEPQQS
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgctttgcgcactatccggagaggttcccgaggagcctgttgtctcgaggaagaccggc
gccgtcttcgagaagcgattgatcgaaaagtacatccaagagaaccacaaagagcccggc
accgatgaagagctagacgttgaagacctcctccccatcaagacaaatcggatcgtccgc
ccccgccccccgcagttcacatccctcccatcgatgctcaaggcttttcaggatgagtgg
gacgccctggtactagagtcatacaacaccaggcaacaactggcgaggacaagggaggaa
ttggccacggcgctgtaccagaacgatgccgccgtccgcgtgattgctcgcttgaccaag
gagcgcgacgaggcccgcgaggccctttccagactcacagttacggcttctgctggcggc
gccgcgactggtggcgatgatgctatggcggtggatagcgagggtctgcccgaggcgttg
gctgcacatgttgatcaggttcaggctgaaaagcaaaagggtcgcaagaagcgaccagtc
cccgaaggctgggcctccacagaagacgtctccgctctccaacaaaccgcctacacagat
ctccccgtcacacaagcaacctcgcttgcccttaacgctggttatgcggcagtcggtgga
ttggacggcaaggtggacctctactcggtcgaggccaaggcacacgagcgctctctggag
atcggcgagccggtaaccgccacggtatggatcggcaacaaggtcgtctcggccacttcc
aggggcagtgtcaaggctgttgagggtggtgtcgagactggttctataacggagcacgct
ggtgctgttacgggcttggctgtgcaccctggcgagcatattcttgcttcggtgggcgtg
gataagggcatcatcttttacgatttgcagtcgctgcagcgtgtggcgcgtgtttatacc
gatgctgaactcacatcctgcgccttccaccccgacggccacctcttcgcggccggcacg
caatccggcctgatcgagatcttcgacaccaagaccctccagcgcatggccaacttcacc
ctcggcagccccgtcaagaccctcgtcttctccgaaaacggcttctggttcgccgccacc
ggcgtcggccagtcctccgtcaccgtctttgaccttcgcaaggagggcgacgccgcgcgc
gccaaggagctccagaccggcgacgtcttgggtcttgcctgggattacacgggccagtac
ctggctactgccggatcgcagggcgtcacagtgcagcagtatgtcaaggctagcaagtcg
tggacggaaccgttgaggacgagcacgcctgccgtggcggtgcagtggggtgataaggcg
aggcagctggtggctgttagcaaggagggtgtggtttccgttttggagccgcagcagagc
gagtag
DBGET
integrated database retrieval system
