Staphylothermus marinus: Smar_0860
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Entry
Smar_0860 CDS
T00485
Name
(GenBank) ribosomal RNA-processing protein RRP42
KO
K12589
exosome complex component RRP42
Organism
smr
Staphylothermus marinus
Pathway
smr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smar_0860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smr03019
]
Smar_0860
Messenger RNA biogenesis [BR:
smr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Smar_0860
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Smar_0860
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6577
MvcA_ins
Motif
Other DBs
NCBI-ProteinID:
ABN69960
UniProt:
A3DMV0
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All DBs
Position
844796..845653
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AA seq
285 aa
AA seq
DB search
MSLTPTRQPIVPKIKHETIKKLLKQGERIDGRKLDEYRPIEVFLNPIPKAEGSAAVKLGN
TFVITGVKLEIGTPYSDRPNEGVLQVHAEFVPLASPTFEPGPPDENAIETARVIDRSLRE
PRAIRLEDLVVIPGKKVWLIFNDLYLIDHYGNIVDTGMLSTMLALNMTKIPRIVSIEDEN
VVIDKTVKEAPLPLNLNVVTVTLGIIDDVIIVDPNIEEELVVDSRITFAVDETNRIVGIQ
KMGMKGIKPKMIDQLVDIALKKASELHSLLREVLNNPDTYIKTLV
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgtccttaactccaaccagacaaccaattgttcccaagataaaacatgaaacaattaag
aaacttttgaagcaaggagaaagaattgatggtagaaaactagatgagtatagacctata
gaagtattcttgaaccctatacctaaagccgaggggagcgctgctgttaaacttggcaac
acatttgttattactggtgtaaagctagaaataggaacgccctacagtgatagaccaaac
gagggtgttttacaggtacatgctgagtttgtcccactagcttcgccgacttttgaacca
ggccctccagatgagaacgctattgaaactgctagagtaatagataggagtctgagagaa
cctagagctattagacttgaagacttagttgtcattccaggtaagaaggtatggctgata
tttaatgacttatacttaatcgatcactacggaaacatagttgatacaggaatgttatca
acaatgctagcactaaacatgactaagataccgagaattgtcagtatagaggatgaaaat
gtagtaattgataaaaccgtgaaggaagcgccgttgccactaaatctaaatgttgtaact
gttacactaggtattattgatgatgtaataatagttgatccaaacattgaggaagaacta
gttgttgattcaagaataacgtttgcagtcgatgaaacaaataggattgttggtatacag
aaaatggggatgaaaggtataaaaccaaaaatgattgatcaattagtagatattgcattg
aaaaaagcatctgaactacatagtttattaagggaagtattaaataatccagatacctac
ataaaaactctagtctag
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