Sinorhizobium meliloti SM11: SM11_chr0063
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Entry
SM11_chr0063 CDS
T01885
Symbol
deaD
Name
(GenBank) putative ATP-dependent RNA helicase protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smx
Sinorhizobium meliloti SM11
Pathway
smx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SM11_chr0063 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smx03019
]
SM11_chr0063 (deaD)
03009 Ribosome biogenesis [BR:
smx03009
]
SM11_chr0063 (deaD)
Enzymes [BR:
smx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SM11_chr0063 (deaD)
Messenger RNA biogenesis [BR:
smx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SM11_chr0063 (deaD)
Ribosome biogenesis [BR:
smx03009
]
Prokaryotic type
rRNA helicases
SM11_chr0063 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEH77351
UniProt:
F7X6E5
LinkDB
All DBs
Position
complement(67309..69201)
Genome browser
AA seq
630 aa
AA seq
DB search
MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP
TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT
LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR
RTLMFSATVPRSIATLAKSYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR
FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL
ENARITAAWAKPPLADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF
VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN
AEPRWLIPMLCRYGKLSKRDIGEIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK
TLPGAPDSSRPRQDKPDFEKKRPPATAAEREHKDFEPKRKFDKQPPVAQDAHSDSRGDKP
WSKKKGKPEAQKTGDFKPGAKRNNAKKRQP
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcgcagggatcgcgccggcgatcgccgaggcgttggcaaaacgcggttac
gagacgctgacgccggttcagcaggccatgctggatccgtcgctcggcaccgccgacgcg
ctggtctccgcccagaccggctcgggcaagaccgtggccttcggcttggcactggcgccg
acgctcatcggttcggcaaggaaattcgcgcaggccggcgcaccgcttgcactcgtcatc
gcgccgacgcgcgaattggcgctgcaggtcatgcgtgagctcgactggctctacgagatg
gcgggggccaccatcgcctcctgcgtcggcggcatggacatgcgcagcgaacggcgcacg
ctggaacgcggcgcccatatcgtcgtcgggacgccgggacggctttgcgaccatatccgc
cgtggatcgctcgatatatcgggactgaaggccgtcgtgctcgatgaggccgacgagatg
ctggacctcggcttccgcgaggatctggagttcattctcgaggcgtcgccggcggatcgc
cgcacgctgatgttctccgccaccgtaccgcgctcgatcgcgacgctcgccaagagttac
cagcgcgacgcagtccgcatcggcgtcacctccgagcagaagcagcacggcgacatcgag
taccgctcgctgctcgtggcgccgagcgaccgtgagaatgccatcatcaacgtgctgcgc
ttttacgaagcgaggaacgcgatcgtcttctgctcgacgcgcgccgcggtcaatcatctg
accgcccgcttcaacaatcgcggcttctccgtcgtggcgctctcaggcgagctcagccag
aacgaacgcacccacgcactgcaggccatgcgcgacggccgcgcccgcgtgtgcatcgcg
accgacgttgcggcgcgcgggatcgaccttccgggcctcgagctcgtgatccatgccgac
ctgccgaccaactccgacacgctgctgcatcgcagcggccggacgggccgcgccggccag
aaaggcgtgagcgcactgatcgtgcccgtgaacgcccgccgcaaggccgagcggctgctt
gaaaacgcacggattaccgccgcctgggcaaagcccccgttggccgacgaggtggcacgt
cgcgacgacgagcgcatcgccgccgatccggcccttgccgaagctccgcgcgaggatgaa
caggcgatcgtcgagacgctgatcagccgctacggggcggaaaagatcgccgcggccttc
gtccggcaattccgctcgaaccgttccgctccggaggaactcgtggatgtcgccgtctac
gacgatcgcaggaaaccccgtcgcgacggcccggctttcacgggtgacagcgagccggct
ccgcgcgcggacttcgccgacggccagtggttttccctctccgtcgggcgcaagcagaat
gccgagccccgctggctgatcccgatgctttgccgttacggcaagctgagcaagcgcgat
atcggcgagatccgcatgcagcccgaggaaacctatgtcgagatgacggccgacggcgca
gaacgccttcttgccgcgatcggcccgaaccggatgctggaaaagggcattcgcgtcaaa
acccttccgggtgccccggacagctccaggccgcggcaggacaagccggacttcgagaag
aagcggccgccggcgaccgcagcggagcgcgagcacaaggacttcgagccgaagcgcaag
ttcgacaagcagcctcccgtcgcgcaggatgcgcattcggacagccggggcgacaagccc
tggagcaagaagaagggcaagcccgaagcgcagaaaaccggcgacttcaagcccggtgcc
aagcgcaacaacgccaagaagcgccagccttga
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