Stackebrandtia nassauensis: Snas_1176
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Entry
Snas_1176 CDS
T01194
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sna
Stackebrandtia nassauensis
Pathway
sna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Snas_1176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sna03021
]
Snas_1176
03400 DNA repair and recombination proteins [BR:
sna03400
]
Snas_1176
Enzymes [BR:
sna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Snas_1176
Transcription machinery [BR:
sna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Snas_1176
DNA repair and recombination proteins [BR:
sna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Snas_1176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADD40886
UniProt:
D3QB69
LinkDB
All DBs
Position
1260234..1263662
Genome browser
AA seq
1142 aa
AA seq
DB search
MAASRPAKTSNQSALAPNRISFGRITEHLEVPNLLALQTDSFDWLVGNDAYRARTEAGAT
CGLDDILEEISPIEDFSGTMSLSFSNPRFDEVKAPIEECKEKDLTYCAPLFVTAEFINHN
TGEIKSQTVFMGDFPMMTPKGTFIINGTERVVVSQLVRSPGVYFDKQPDKTSDRDLSSVK
VIPGRGAWLEFDIDKRETAGVRIDRKRRQAVTVLLKAIGWTNDQIRERFGWSEIMMATLE
KDHVGSQDEALLDIYRKLRPGEPPTKENAETLLDNLFFNPKRYDLAKVGRYQVNKKFGLS
TPISTGVLTEADLVSIIEYLCRLQNGEDGYDRDDIDHFGNRRIRTVGELIQNQVRVGLSR
MERVVRERMTTQDVEAITPQTLINIRPVVAAIREFFGTSQLSQFMDQVNPIAGLTHRRRL
NALGPGGLSRDRAAMEVRDVHPSHYGRMCPIETPEGPNIGLIGALAAFARVNPFGFIETP
YRRIDNGRVTDDVKYLTADEEDRCVIAQANTKLNDDGTFAEERILVRRKGGEMELVGHDA
VDYMDVSPRQMTSVATAMVPFLEHDDANRALMGANMQRQAVPLIKTQSPFVGTGMEYRAA
VDAGDVVVNEVAGVAEDVCADYITVHQDDGFRRTYLLHKFHRSNAGTCVNQIPVINEGDR
VEAGQVMADGPCTDKGEMALGKNLLVAFMPWEGQNYEDAIILSSRLVQEDVLTSIHIDEH
EVDARDTKLGPEEITREIPNVSEEMLSDLDERGIIRIGAEVRDGDILVGKVTPKGETELT
PEERLLRAIFGEKAREVRDTSLKVPHGESGTVIGVRTFSRDDGDELSPGVNELVRVYIAQ
KRKISDGDKLAGRHGNKGVISKIVPAEDMPFLPDGTPVDVVLNPLGVPGRMNIGQVLELH
LGWIAKSGWQLAGDAEGWQKSLKAIGAEEAPPDSTVATPVFDGVHLEEITGLLESARPNR
DGDRMVGTDGKAKLFDGRTGEPFPGPISVGYMYILKLNHLVDDKIHARSTGPYSMITQQP
LGGKAQFGGQRFGEMECWAMQAYGASYALQELLTIKSDDILGRVKVYEAVVKGENIPEPG
IPESFKVLLKELQSLCLNVEVLSSDGTAVELRDSDDEVFRAAEELGIDLSRHEPSSVDLE
GA
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcttcccgccctgcgaagaccagcaaccagagcgcgctcgctcccaaccgaatc
tcgttcgggcgcatcaccgaacatcttgaggttcccaacctgcttgccctgcagaccgac
tccttcgactggctggtgggcaacgatgcctaccgtgcccgtaccgaagcgggggcgacc
tgtgggctggacgacattctcgaagagatcagcccgatcgaggacttttcgggaaccatg
tccctttccttctccaaccctcgcttcgacgaggtgaaggctcccatcgaggagtgcaag
gagaaggacctcacctactgcgctccgttgttcgtgaccgcggagttcatcaaccacaac
accggcgagatcaagtcgcagacggtgttcatgggcgacttcccgatgatgacgcccaag
ggcaccttcatcatcaacggcaccgagcgggtcgtcgtctcgcagctggtgcgttcgccg
ggcgtctacttcgacaagcagcccgacaagaccagtgaccgcgacctgtccagcgtcaag
gtcatccccggccggggcgcctggctggagttcgacatcgacaagcgcgagaccgcgggc
gtgcgcatcgaccgcaagcgccgccaggccgtcaccgtgctgttgaaggccatcggctgg
accaacgaccagatccgggaacgcttcggctggtccgagatcatgatggccacgctggag
aaggaccacgtcggcagccaggacgaggcgctgctcgacatctaccgcaaactgcgtccc
ggcgagccccccacgaaggagaacgccgagaccctgctggacaacctgttcttcaacccg
aagcgctacgacctggccaaggtggggcgctaccaggtcaacaagaagttcgggctgtcg
acgccgatcagcaccggcgtgctcaccgaggccgacctggtctcgatcatcgagtacctg
tgccggctgcagaacggcgaggacggttacgaccgcgacgacatcgaccacttcggcaac
cggcgcatccgcaccgtgggcgaactgatccagaaccaggttcgggtcggtctgtcccgt
atggagcgtgtggtccgggagcggatgacgacccaggacgtcgaggcgatcacgccgcag
accctgatcaacatccgtcccgtcgtggccgcgatccgggagttcttcggcacctcgcag
ctgtcgcagttcatggaccaggtcaacccgatcgcgggtctgacccaccgccgccgcctg
aacgctctgggcccgggtggtctgtcccgcgaccgcgccgccatggaagtccgagacgtc
cacccgtcgcactacggccggatgtgtccgatcgagacgccggaaggcccgaacatcggc
ctcatcggcgccctggcggcattcgcccgggtcaaccccttcggtttcatcgagaccccg
taccgcaggatcgacaacggccgggtcaccgacgacgtgaagtacctgaccgctgacgag
gaggaccgctgcgtcatcgcgcaggcgaacacgaagctcaacgatgacggcaccttcgcc
gaggagcggatcctggtgcgtcgcaagggcggcgagatggaactcgtcgggcacgacgcc
gtcgactacatggacgtctcgccgcgccagatgacctccgtggccaccgccatggtgccg
ttcctggagcacgacgacgccaaccgcgccctgatgggcgccaacatgcagcgtcaggcc
gtcccgctgatcaagacccagtcgccgttcgtcggcaccggcatggagtaccgtgccgcc
gtcgacgccggtgacgtggtggtcaacgaggtcgccggtgtcgccgaggacgtgtgcgcc
gactacatcaccgtgcaccaggacgacggcttccgccgcacctacctgctgcacaagttc
caccgctccaacgcgggcacctgcgtcaaccagatccccgtcatcaacgagggcgaccgg
gtcgaggccggacaggtcatggccgacgggccgtgcaccgacaagggcgagatggcgctg
ggcaagaacctgctggtggcgttcatgccgtgggagggccagaactacgaggacgcgatc
atcctgtcctcgcggctggtccaggaggacgtcctgacgtccatccacatcgacgagcac
gaggtcgacgcccgcgacaccaagctgggtccggaggagatcacccgggagatcccgaac
gtctccgaggagatgctgtccgacctcgacgagcgcggcatcatccgcatcggcgccgag
gtccgcgacggcgacatcctggtcggcaaggtcacccccaagggtgagaccgagctgacc
ccggaggagcggctgctgcgcgccatcttcggtgagaaggcccgcgaggtccgcgacacc
tccctgaaggtgccgcacggcgagagcggaaccgtcatcggtgtgcgcaccttcagccgc
gacgacggcgacgaactgtcgcccggcgtcaacgagctggtgcgggtgtacatcgcccag
aagcgcaagatctccgacggtgacaagctggccggtcgtcacggcaacaagggcgtgatc
tccaagatcgtgcccgccgaggacatgccgttcctgccggacggcacccccgtcgacgtc
gtcctcaacccgctgggtgtgcccggccgaatgaacatcggtcaggtactggaactgcac
ctgggctggatcgccaagtccgggtggcagctggcgggcgacgccgagggctggcagaaa
tcactgaaggccatcggcgccgaggaggctccgccggactcgacggtggccaccccggtg
ttcgacggcgtccacctcgaagagatcaccgggctgctggagtcggcccgtcccaaccgg
gacggcgaccgcatggtcggcaccgacggcaaggccaagctgttcgacggccgcaccggc
gagccgttcccgggcccgatctcggtgggctacatgtacatcctgaaactgaaccacctg
gtcgacgacaagatccacgcccgttcgaccggcccgtactcgatgatcacccagcagccg
ctcggtggtaaggcgcagttcggtggacagcggttcggcgagatggagtgctgggccatg
caggcctacggcgcgtcctacgcgttgcaggagttgctgaccatcaagtccgacgacatc
ctcggccgcgtcaaggtgtacgaagccgtcgtcaagggcgagaacattcccgagccgggg
atcccggagtcgttcaaggtgctgctcaaggaactgcagtcgctgtgcctcaacgtggag
gtgctgtcgagtgacggtaccgccgtcgagctgcgcgacagtgacgacgaggtgttccgc
gccgccgaagaactcggcatcgacctgtcccggcacgagccgagcagcgtcgatctcgaa
ggagcgtaa
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