Sphingomonas naphthae: PQ455_00790
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Entry
PQ455_00790 CDS
T08850
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
snap
Sphingomonas naphthae
Pathway
snap03410
Base excision repair
snap03430
Mismatch repair
snap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PQ455_00790 (recJ)
03430 Mismatch repair
PQ455_00790 (recJ)
03440 Homologous recombination
PQ455_00790 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snap03400
]
PQ455_00790 (recJ)
DNA repair and recombination proteins [BR:
snap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PQ455_00790 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PQ455_00790 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQ455_00790 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
VEK-30
Motif
Other DBs
NCBI-ProteinID:
WCT73801
LinkDB
All DBs
Position
complement(165383..167155)
Genome browser
AA seq
590 aa
AA seq
DB search
MQPRRPVLDITRSILGQPWHWRGGSLDMADEGFRPDDLVTGLLMARGCPREGVEAHRTPT
LRAFMPDPSIFRDMDVAARRLADAVQANEPVTIFGDYDVDGATSAALLVRLLRSLGLTPA
AYIPDRLMEGYGPSGEALVRIAEGGARLIVTVDCGAQAFDALEMARAAVVDVIVVDHHKC
AAALPVAHALVNPNRLDEGEGAAHGHLAAVGVAFLLGAALLRELRGRGFFTDRAEPKLID
LLDLVALGTVADVAQLKGLNRAFVTQGLKVMRQGRNIGLAALARAARLTKPVSCTDLGFA
LGPRINAGGRVGKSDLGVRLLTTDDEAEADGIAAELDRLNEERRAIEAAVIEEATERAGT
QGNRAVAVISGEGWHPGVIGIVASRLKEKLGRPTIIIAVDADGVGKGSGRSISGVDLGAA
VLAAKDMGLLVAGGGHAMAAGLTIDATRIDALADFLDERLSADVARASDGRALLLDAVVA
PGGVGPSLVDALEEGGPYGAGWPAPRVAAGPVRIVKVDIVGNGHVRAIVVGSDGRSIKTI
AFRAADTPLGQALLAAGTTRQLWIAGRAKVDDWSGRPEAEMHLDDAAWAD
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctcgccgccctgttctcgatatcacccgttcgatcctcggccagccctggcat
tggcgcggcggatcgctggacatggcggacgaggggtttcggcccgatgatctcgtcacc
ggcctgctgatggcgcgcggctgcccgcgcgagggggtcgaggcgcatcgcacgcccacc
ttgcgcgcgttcatgcccgacccgtcgatcttccgcgacatggatgtggcggcgcgtcgc
ctcgccgatgcggtgcaggcgaacgagccggtgacgatcttcggcgattatgacgtggac
ggcgccacctccgccgcgctgctggtgcggctgctgcgctcgctcggcctcacccccgcc
gcctacattcccgatcggctgatggagggctatggcccctcaggcgaggcgctggtgcgg
atcgccgagggcggcgcgcggctgatcgtgacggtcgattgcggcgcgcaggcgttcgac
gcgctggagatggcgcgcgcggcggtggtggacgtgatcgtcgtcgatcaccacaaatgc
gccgccgcgctgccggtggcccatgcgctggtgaaccccaaccggctcgacgagggcgag
ggcgcggcgcacggccatctggcggcggtgggtgtcgccttcctgctgggcgcggcgctg
ttgcgcgaattgcgcgggcgcggcttcttcaccgaccgggccgagccgaagctgatcgac
ctgctcgatctggtcgcgctcggcaccgtcgccgatgtggcgcaattgaaggggctcaac
cgtgccttcgtgacgcagggcctgaaggtgatgcgccagggccgcaacatcggcctcgcc
gcgctggcccgcgccgcgcggctgaccaagccggtcagctgcaccgatctgggcttcgcg
ctggggccgcgcatcaacgccggcggacgggtcggcaagtccgatctcggcgtgcgcctg
ctcaccaccgacgacgaggccgaggccgacggcatcgccgccgaactcgatcggctgaac
gaggaacgccgcgcgatcgaggcggcggtgatcgaggaagccaccgaacgcgccggcacc
cagggcaatcgcgcggtcgcggtgatatccggcgagggctggcatccgggcgtgatcggc
atcgtcgccagccggctgaaggagaagctgggcaggccgacgatcatcatcgcggtggac
gcggacggcgtcggcaagggatcgggccgctcgatatcgggcgtcgatctcggcgcggcg
gtgctcgccgccaaggacatggggctgctggtggcgggcggcggccatgcgatggcggcg
ggtctcaccatcgatgccacgcgcatcgacgcgctggcggacttcctcgacgagcgcctc
tccgccgacgtggcgcgggcgtcggacggccgggcgctgctgctggacgcggtggtggcg
cccggcggggtcggcccgtcgctggtcgatgcgctggaggaaggcggcccctatggcgcc
ggctggcccgcgccgagggtggcggccgggccggtgcggatcgtgaaggtcgacatcgtc
ggcaacggccatgtccgcgcgatcgtggtgggcagtgatggccgcagcatcaagacgatc
gccttccgcgccgccgacacgccgctggggcaggcgctgctcgccgccggcaccacccgc
cagctgtggatcgccggccgcgccaaggtggacgattggtccggccggcccgaagccgaa
atgcacctcgacgacgccgcctgggccgattga
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