Serratia nematodiphila: NLX84_01160
Help
Entry
NLX84_01160 CDS
T08619
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
snem
Serratia nematodiphila
Pathway
snem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NLX84_01160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snem03021
]
NLX84_01160 (rpoB)
03400 DNA repair and recombination proteins [BR:
snem03400
]
NLX84_01160 (rpoB)
Enzymes [BR:
snem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NLX84_01160 (rpoB)
Transcription machinery [BR:
snem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NLX84_01160 (rpoB)
DNA repair and recombination proteins [BR:
snem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NLX84_01160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UTO01746
LinkDB
All DBs
Position
250397..254425
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKIVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIQSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRL
SSLVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGIEADKLSKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKSDFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKETEIKKLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtgctggacataccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccagaagggcagtacggccttgaagccgcattccgttctgttttccctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtcttc
gacgtcaaagagtgccagatccgtggtgtgacgttctctgcaccgctgcgcgtaaaactg
cgcctggttatctatgagcgcgaagcgcctgaaggtacggtcaaagacatcaaggaacaa
gaagtctacatgggcgaaattccgctcatgaccgaaaacggcacctttgtgatcaacggt
actgagagggttatcgtatctcagttgcaccgtagtcctggcgtattcttcgacagcgat
aagggtaaaacccactcctcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttggacttcgagttcgatccgaaagacaacctgttcgtgcgtattgaccgt
cgccgcaaactgcctgcgaccatcattctgcgcgcgctgaactacaccactgaacagatc
ctcgacctgttctttgacaagatcgtcttcgaaatccgcgacaacaagctgcagatggag
ctggtgcctgagcgcctgcgtggtgagaccgcttcgttcgatatcgaagccaacggcaag
atctacgtagagaaaggccgtcgtatcaccgcccgtcatatccgtcagctggaaaaagac
gacattcagagcattgaagtaccggtagagtacatcgcgggcaaagtggtcgcgaaagac
tatatcgataccaataccggcgaactgatctgcgcagccaacatggagctgtcgctggat
ctgctggccaagctgagccagtccggccacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcgcgtatatctctgaaacgctgcgtgtcgatccgaccaacgatcgtctg
agctcgctggtagaaatctaccgcatgatgcgtcctggtgagccgccaacgcgcgaagct
gccgaaagtctgttcgagaacctgttcttctccgaagaccgctacgatctgtccgcggtc
ggccgtatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttcgggcatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggcaagggc
gaagtggacgatatcgaccacttgggcaaccgtcgtatccgctccgtcggcgaaatggcc
gagaaccagttccgcgtaggtctggtgcgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggctccagccagctgtcccagttcatggaccagaacaacccg
ttgtccgagatcacgcacaagcgtcgtatctctgcactgggcccgggcggtctgacccgt
gagcgcgccggctttgaagttcgagacgtacacccgacccactacggccgcgtgtgtcca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggtgacc
gatgaaatcaactacctgtctgctattgaagaaggcaacttcgttatcgcccaggcgaac
tccaacctggatgaagaaggccgcttcgtagaagacctggtcacctgccgcagcaaaggc
gaatcaagcctgttcagccgcgaccaggttgactacatggacgtatccacccaacaggtt
gtttccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgtaccaaccctgcgcgctgacaagccgctggtc
ggtaccggtatggaacgcgctgtagcggttgactccggcgtaaccgccgttgccaaacgc
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgatatttacaacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcggatggcccatcgacagacctgggcgaactggcactgggccagaacatg
cgcgtagcgttcatgccttggaacggctacaacttcgaagactccatcttggtctccgag
cgcgtggtgcaggaagatcgcttcaccaccatccacatccaggaactggcgtgcgtgtct
cgcgacaccaagctggggcctgaagagatcaccgccgacatccctaacgtgggtgaagct
gcgctctccaagctggatgaatccggtatcgtgtatatcggtgctgaagtgaccggcggc
gacattctggtcggtaaggtaacgcctaaaggcgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgtg
ccgaacggcgtttccggtacggttatcgacgtacaggtcttcacccgcgatggcgtggaa
aaagacaagcgcgcgttggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagccggcctgttcgcacgtatccacgcggtgctggtt
gcgggtggcatcgaagccgacaagctgagcaaactgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaagcaaaaccagctggagcagctggctgagcagtacgacgaa
ctgaaatccgacttcgagaagaagctggaagccaagcgtcgtaagatcactcagggcgac
gatctggcgccgggcgtgctgaaaatcgtcaaggtttatctggccgttaaacgtcagatc
caaccgggtgacaagatggcgggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gcgaaaggcatcggtgagaagatcaaccagatgctgaagcagcagcaggaagtggccaag
ctgcgtgagttcatccagaaggcctacgatctgggcgacgacgtttgccagaaagttgac
ctgaacaccttcagcgacgacgaagtgctgcgtctggcagagaacctgaaaaaaggtatg
ccgatcgcaacgccggtgtttgacggtgcgaaagagactgaaatcaagaagctgctggaa
atgggcggaatcccgacctccggtcagatcacgctgttcgatggccgtaccggtgagcaa
ttcgagcgccaggttactgttggctatatgtacatgctgaaactgaaccacttggttgac
gataaaatgcacgcccgttcaaccggttcttacagcttggttactcagcaacctctgggg
ggtaaagcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcactggaagca
tacggcgcggcttataccctgcaggaaatgctcaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccggatggagccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctcggcatcaacatcgaactggaa
gacgagtaa
DBGET
integrated database retrieval system
