Simkania negevensis: SNE_A15120
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Entry
SNE_A15120 CDS
T01559
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sng
Simkania negevensis
Pathway
sng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SNE_A15120 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sng03021
]
SNE_A15120 (rpoB)
03400 DNA repair and recombination proteins [BR:
sng03400
]
SNE_A15120 (rpoB)
Enzymes [BR:
sng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SNE_A15120 (rpoB)
Transcription machinery [BR:
sng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SNE_A15120 (rpoB)
DNA repair and recombination proteins [BR:
sng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SNE_A15120 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
7TMR-HDED
Tugs
Motif
Other DBs
NCBI-ProteinID:
CCB89389
UniProt:
F8L974
LinkDB
All DBs
Position
gsn.131:complement(1578117..1581881)
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AA seq
1254 aa
AA seq
DB search
MLKRPPERVSFISREEIIDLPNLIEIQIKSFQQFLQADRLPHERENIGLEEVFQEIFPIK
SYDEKTSLEYLSYNLGVPKYSPEECIRRGITYNVTLKVKFRLTDETGIKEEEVYMGTVPV
MTDQGTFIINGAERVIVSQLHRSPGISFEQEKHAKGNVLYSFRIIPYRGSWLESSFDIND
LIYVYVDRKKRRRKVLATSFIRTLGYSSDSDIIEEFFNTFRVKIKSDKDFPKLVGKILAE
DVLEEDTGVVFGKASEKLTTAMLKRMLDAGITAIRIAEDADETSPIIKMLAKDPTDSYES
ALKDFYRKIRPGEPATLSNARSTIMRLFFDPKRYNLGKVGRYKLNRKLGRETTDEDLEIV
TLKKEDIVDALKYLIRLKAGDEEAQIDDIDHLANRRVRSVGELVQNQCRIGLARMEKIIK
ERMNLFDFSSDTLTPGKLVSAKGLAGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLG
PGGLNRERAGFEVRDVHSSHYGRVCPIETPEGPNIGLITSLSSYAKINEFGFIETPYRIV
RDGIVTEEIEYMTADQEEKCVIAQASAELDEHNMFVEPIVWARYRGEPLRIETEKVTHMD
VSSKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKAEAPIVGTGLEWRTARDSGA
VIVAEEDGIVEYVDGYQIVIASKANRMNKKTYTLKKFLRSNAGTCINQTPLCSVGDEVKA
GETIADGPATDKGEVALGKNVLVAFMPWCGYNYEDAIIMSEKLIKDDAYTSVYLEEFELT
ARDTKLGKEEITRDIPNVSEEALADLGEDGIIRIGAEVKPGDILVGKITPKSETELSPEE
RLLRAIFGEKAADVKDASLTAPPGTEGVVMDVKVFSRRDRLSKTDDEMVEEATRIKDVHK
EYKEKEADLLMQFHEKLGALLLGDDAPDSIMHRITGDVIVRKGEKITQDLLEMIESEDAD
HLIFPPNDTYETLKQVLREHEKAMQQLQMEHKSEVEYMRKGDTELDPGVIRQVKVYVATK
RKLQVGDKMAGRHGNKGVVSNIVPEADMPYLSDGQTIEIILNPLGVPSRMNMGQLLETHL
GIAARKAGIWVKSPVFEGFPEDRIWEMMTEYGLPSSGKMPLYDGRSGERFDNSVVVGYIY
MLKLSHLVADKIHARAIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGAAHLLQEML
TVKSDDVSGRTRIYESIVKGDNTLKAGTPESFNVLVKEMQGLCLDVRAESAAEG
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaagacccccagagcgggtgagctttattagccgagaagaaattatcgatctt
ccaaaccttatcgaaatacagattaaatcttttcaacagttcctgcaggctgatcgattg
ccacatgaacgtgaaaatatcggcttagaagaagtctttcaggaaatattccctattaaa
tcttatgatgaaaaaacatctctagagtatctctcctacaacttaggagttcccaagtac
tctcccgaggaatgtatcagacgaggaatcacttacaatgtgacgttgaaagtgaaattc
cgattgaccgatgaaaccgggattaaagaagaagaagtctacatgggaacagttccagtc
atgactgaccaaggaacatttattatcaatggagctgaaagggtcattgtttctcagttg
caccgctcacctggtatttcgtttgagcaagaaaagcatgccaaagggaacgttctttac
tctttccgcatcattccataccgaggaagttggcttgaatcttcgttcgacatcaacgat
ctgatttatgtttatgtcgaccgaaaaaaacgtcgtcgcaaagttctcgcaacctcattt
atacgaacacttggctattcatccgattctgacattatcgaggaatttttcaacactttc
cgagttaaaatcaaatctgacaaggatttccccaaacttgttggtaaaatcttggcagaa
gatgtattagaagaagacacgggcgtagtttttggcaaagcttctgaaaaactcaccacg
gcaatgttaaagcgcatgcttgacgctgggattactgcgattcgcattgcagaagatgcc
gacgaaactagcccgatcattaagatgcttgcaaaagatccgactgactcatatgaatca
gcccttaaagacttttaccgtaaaattcgtcctggtgaaccagctacactttcaaacgca
cgatcgactattatgcgtcttttctttgatcctaaacggtataacttaggtaaagttggg
cgttataagctcaatcgcaagttagggcgtgagacaacagatgaggatcttgaaattgtc
actttgaaaaaagaagacatcgtagatgcccttaaataccttattcgattgaaagcaggt
gacgaagaagcccaaattgatgacattgaccacttagcaaatcgtcgtgttcgctctgtt
ggagaactcgtccagaaccaatgccgaattggccttgctcggatggaaaaaatcatcaaa
gaaagaatgaacctctttgacttttcttcagatactctaacaccagggaaactcgtttca
gcaaaagggcttgctggggttcttaaagacttttttggacgctctcagctttcacaattc
atggatcaaacgaatccaatcgctgaattgacacacaaacgccgcctttcgtctttagga
cctggaggtcttaacagagaacgtgctgggtttgaagtgcgcgacgtacactcaagtcac
tatggacgtgtttgcccgattgagacacctgaaggaccgaacattggtttgatcacttca
ctttcttcttatgcgaaaatcaatgaatttggattcatcgagactccataccggatcgtc
cgagatggcattgtcacggaagaaatcgagtacatgacagccgaccaagaagaaaagtgc
gtgattgcacaggcatctgcggaactcgatgaacacaacatgtttgtcgagccaatcgtg
tgggcccgttatcgtggagaacctctcaggattgaaactgaaaaagtcacccacatggac
gtttcgtccaaacagcttgtgtctgtagtgacaggattgattccgttcttagaacacgat
gatgcgaaccgtgcccttatgggatcaaacatgcaacggcaagcagttcctcttcttaaa
gcagaagctccgattgtcggaactggacttgagtggcgtaccgctcgcgactctggtgcg
gttattgttgctgaagaagatggaattgtcgagtatgttgacgggtaccaaatcgtgatt
gcttctaaagctaaccggatgaacaaaaagacctatactttgaaaaagttcctccgctcg
aatgccggaacctgtatcaatcagaccccactttgctccgtcggagatgaagtgaaagct
ggggaaacgattgctgatggtccagcaaccgataaaggagaagttgctttagggaaaaac
gttctcgttgcgttcatgccatggtgtggatacaactacgaggatgccatcatcatgtcc
gaaaaactcattaaggacgatgcttacacctcggtttaccttgaagaatttgaattaaca
gcccgagacactaaacttggaaaagaggaaatcacacgcgatattcccaacgtttcggaa
gaagctttagctgaccttggtgaagatggcattatccgcattggtgccgaagtcaaacct
ggtgacattcttgttggtaaaatcaccccaaaatctgaaacagaactttctcctgaagag
cgcttacttcgagcaatttttggagaaaaagctgcggatgttaaagatgcctctttgaca
gcgcctccagggacggaaggggttgtcatggacgtcaaagttttcagtcgacgcgatcgt
ctttcgaaaaccgatgatgaaatggttgaagaagccactcgcatcaaagatgtccacaaa
gaatacaaggaaaaagaagcagacctcttgatgcaattccatgaaaaactcggagccctt
ctccttggagacgacgcaccagattcaatcatgcatcgcatcacaggagatgttatcgta
agaaagggtgaaaagatcacccaagatttactcgaaatgatcgagtcagaagatgccgat
cacttgattttcccaccaaatgacacgtacgaaacactgaagcaagtcttgcgcgaacat
gaaaaagcgatgcagcagcttcaaatggaacacaaatccgaagttgagtacatgcgtaaa
ggggatacggaacttgaccctggcgtaatccgccaagtaaaagtttacgttgcaacaaaa
cggaagttgcaagtcggggataaaatggcaggtcgccatggaaacaaaggtgttgtctcc
aatatcgttccagaagcagatatgccctatctttctgacggacaaacaatcgaaatcatt
ttaaaccctctcggtgtcccttctcgtatgaatatgggacagttgcttgagacccacctc
ggaattgcagcgcgtaaagctggaatttgggtgaagagccccgtatttgaaggtttccca
gaagatcgtatttgggaaatgatgaccgaatatgggctaccatcaagtggaaaaatgcca
ctttacgatggccgttcaggcgaacgtttcgacaactctgtggttgtgggctatatctac
atgctcaaactctctcacttagttgccgacaagatccacgcccgtgcgattggaccttac
tcacttgtgacacaacaaccacttggtggtaaggcccaaatgggtggacaacgatttgga
gagatggaggtctgggctcttgaagcttacggtgccgcccatctactacaagagatgctt
actgttaagtcagacgacgtttctggaagaacacgcatctacgaatcgattgttaaaggc
gataacaccttgaaggccggaactcctgagtcgttcaacgttctcgtcaaagaaatgcaa
ggcctatgtcttgatgtacgtgcagaaagcgctgccgaagggtaa
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integrated database retrieval system
