Salvelinus namaycush (lake trout): 120022489
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Entry
120022489 CDS
T07522
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120022489
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120022489
Enzymes [BR:
snh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
120022489
Protein phosphatases and associated proteins [BR:
snh01009
]
HAD phosphatases
Fcp/Scp phosphatases
120022489
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120022489
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FCP1_C
BSH_Fcp1
NIF
PTCB-BRCT
BRCT
Nairovirus_Gn
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
120022489
NCBI-ProteinID:
XP_038822342
UniProt:
A0A8U0PCH7
LinkDB
All DBs
Position
27:23043664..23163383
Genome browser
AA seq
1034 aa
AA seq
DB search
MEEPADSGGGGAAQGPMAQVAEIRCPIAARPMRLLEWKVKPGSLVNVDSVLALCAPIPPE
KEAGSHPPEQPNRLSEKKLKSDRAGVVKELCCQLGQVISPGVVVVRVEECSHPIVMKGLC
AECGQDLTQMQTNNGRQQALISTANVSMVHSVPELMVSSEQAEQLGREDQQRLHRNKKLV
LMVDLDQTLIHTTEHHCQRMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHV
FTFGSRLYAHTIAGFLDPEMKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDR
EDVWKFAPNLITVKKYIYFKGTGDINAPPGSKEAQQGRKAGSQASRPAEASEPAVTSGTT
GPKTGPSGGSSTSEEQSNGLKKQRAKDHNNGGRGESTAPSATQGAAANERTQPDGGEAVE
EERGQGEGAEASAAAQVSDRMNVKDEMKAEGNGEGKDGSRTLGSGEEAPLPGGVNSSSTP
LPPSSTPPDLHEPNSNLDFDLSSDSDADSLTGKPPSSDNERDGVSSQTKKSKQEGAEQAA
VEEPSGGAGGKEGENSSAVVGETSDETSGAEVVFPPDPEQENGRLERREAETESQNSEQS
GVTMGEESLDPSMEEEEEEEVDVDKDDHLIYLEEVLERIHGEYYARYNGFLRKERPEMPD
IRKIVPELKARSLEGTTIVFSGLYPTNYPMERTRENYHAKALGAKIGKGLLLRSKDPGRT
THLIAARAGTEKVRQAQGCKHLHVVNPDWLWGCLERWERVEESLYPLKEDYTKTQRSNSP
VTFPDLQGSFQKPRFPPAPLHHHPPPAAPEMRTYDPVTGKLIRRGTQASRPPSYLQASMS
AAHGDQTSLRGGQKDQQGETAGPSSRDDEQPGPSCRRRERQPSMSETNPLYTFCKEDLDS
MDKEVDDMLDEESDEEGDGRGKKTREMEEEEEMEEEAEGQQPQGSGQSTEGEKQHHQQGL
ATVVEETEKVQMPPSDQGGMTTGSVSRGQKRKLEEEEGESADESTKDSNEEEEGSSSEAD
EMAAALDAELNDFM
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcccgcagattccggcggtggcggggcagcacagggccccatggcgcaagtg
gcggagatccgctgcccaatagcagcgcgtcctatgcggctgctggaatggaaagtcaaa
cccggttccctcgtcaatgtggactcggtgttggcgttatgtgctcccatcccaccggag
aaagaggccgggtcccatccgccagaacagcccaatcggctgtcagagaagaagctgaaa
tcggaccgagctggagtggtgaaagagctatgctgtcaacttggacaagtcatatcgcct
ggtgttgtggttgtaagagtagaagaatgcagccatcccattgtgatgaaaggcctgtgt
gctgaatgtggccaggacctcacacagatgcagaccaataatgggaggcagcaggctctc
atctccaccgcaaatgtttccatggtgcacagtgtccctgagttgatggtcagctctgag
caagcagagcagctgggcagagaggaccagcagagactccacaggaacaagaagctggtt
ctgatggttgatctggaccagaccctgatccacaccaccgagcatcactgccagcgcatg
tccaataagggaatcttccacttccagctgggccggggggagcccatgttacacacgcga
ctgcgtccgcactgcaaagacttcctggagaagatcgccaagctctacgagctgcatgtc
ttcaccttcggaagccgcctctatgcacacaccatcgcaggcttcctggaccctgagatg
aagctgttttcccacaggatcctgtccagagacgaatgcatcgaccccttctccaagaca
gggaacctgaggaatctgttcccatgtggagactcgatggtatgtattatagatgaccgg
gaggatgtgtggaagtttgctcccaacctgatcactgtgaagaaatacatctacttcaag
gggacaggagacatcaatgccccacccgggtctaaagaggctcagcagggaaggaaagca
ggcagccaggccagccgaccagcagaggcctcagaaccagcagtaacgtcagggacaacc
gggcctaaaacagggccatctggagggtcgtctacatcagaggagcagagtaacggtctt
aagaaacaacgggccaaagaccacaacaatggagggaggggggagtcaacagcaccctca
gccactcagggagcagcagccaatgaacggactcaaccggacggtggcgaggctgtggag
gaggagcggggtcagggcgagggagccgaggccagcgcggcagcacaggtgagcgacagg
atgaatgtgaaagatgagatgaaagcggaggggaatggagaggggaaggatggcagcagg
acattgggctcaggggaggaagctccccttccgggtggggtgaactcatcctccactcct
cttcctccatcctccactcctccagacctccatgagcccaacagcaacctggactttgac
ctgtccagcgacagtgacgctgactctcttacgggtaaacccccctcatcagacaacgag
agggacggggtgtccagccagaccaagaagtccaaacaggaaggggcggagcaggcagca
gtagaggagccatcaggcggggctggaggaaaggagggggagaacagctctgcggtagta
ggggagacctcagatgagacgtctggggcagaggttgtcttccctccagacccggagcag
gagaacgggcgcttagagcggagggaggctgagacagagtcccagaacagtgaacagtca
ggagtcaccatgggggaggagtctctggacccgagcatggaggaggaggaagaggaggag
gtggacgtggacaaggatgaccacctcatctacctagaagaggtgctggagcgtatccat
ggagaatactacgcccgctacaacggcttcctccggaaggaacgcccagagatgcctgac
atcaggaagatcgtcccggagttgaaggcccggagcctggagggcaccaccattgtgttc
tctggactgtaccccaccaattaccccatggagagaaccagggagaattaccatgccaag
gccctgggagcaaagataggaaaaggcctcctgctccgctctaaagaccctggcagaacc
acccacctcattgctgctagagcaggtacagagaaggtgcgtcaggcccaaggctgtaaa
catctccatgtggtgaatcctgactggctgtggggatgtctggagcgctgggagagggtg
gaggaatcactgtatccactgaaggaggactacaccaagacccaacggagcaacagccca
gtcacgttccctgacctccaaggctccttccagaaaccccggttcccccccgcccccctc
caccaccaccctcctccagctgcccctgagatgcggacgtacgacccggtcacggggaag
ctgattcgccgtgggactcaggcctccagaccaccatcttacctccaggcctccatgtct
gctgcccacggcgaccagacctcgctcagggggggtcagaaggaccagcagggggagacg
gcgggtccctccagtcgagacgacgagcagcctggaccctcctgccggcggagggaacgc
cagcccagcatgtcagagaccaaccccctctacacattctgtaaagaagacctggacagc
atggacaaggaggtggacgacatgctagatgaggagagcgatgaggaaggagatggccgg
gggaagaagacaagggagatggaggaggaagaggagatggaggaggaagcagaggggcag
cagccccagggtagtggacagagcactgagggagagaagcagcaccaccaacagggtctg
gccaccgttgtagaggagacggagaaggtacagatgccacctagtgaccagggcggtatg
acgacgggcagcgtgtcaaggggacagaagcgcaagcttgaggaggaagagggggagtcg
gcggacgagtccaccaaggattctaacgaggaagaggaaggaagcagctcagaggctgat
gagatggccgctgccctggatgcggagcttaacgacttcatgtga
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