Salvelinus namaycush (lake trout): 120034296
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Entry
120034296 CDS
T07522
Name
(RefSeq) retinoic acid receptor alpha-like isoform X1
KO
K08527
retinoic acid receptor alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120034296
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120034296
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120034296
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
120034296
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
SRR1
Motif
Other DBs
NCBI-GeneID:
120034296
NCBI-ProteinID:
XP_038836725
UniProt:
A0A8U0Q2T0
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Position
Sna41:2523871..2701795
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AA seq
461 aa
AA seq
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MAGKGNPCHPPGGPGSAGGPTVSVGGFPMPHYSYFFPHMLGGLSPPTLSGLPVSGYNTPS
PAAIETQSTSSEEIVPSPPSPPPPPRIYKPCFVCADKSSGYHYGVSACEGCKGFFRRSIQ
KNMVYTCHREKGCIINKVTRNRCQYCRLQKCLEVGMSKESVRNDRNKKKKEEKKPECPEI
YVLSTETEQMIERVRKAHKETFPSLCQLGKYTTNNSAEHRVALDVNLWDKFSELSTKCII
KTVEFAKHLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQM
HNAGFGPLTDLVFAFAQTLLPLEMDDAETGLLSGICLLCGDRQDLEQADKVDLLQEPLLE
ALKIYVRKRRPHKPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENS
EGLEGQGASGGRSSGGGAPPGSCSPSLSPSSARSSPPAPSP
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcaagggtaacccctgccatcccccgggggggccagggagtgcagggggcccc
actgtctctgtggggggattccccatgcctcactactcctacttcttcccccacatgctg
ggggggctgtcccctcccacgctgtccggactgcccgtcagcggatacaacaccccgtcg
ccagccgccatagagacccagagcaccagctcggaggagatagtccccagtcccccctcg
ccgcctcctcccccacgaatctacaaaccctgcttcgtttgtgcggacaagtcctcggga
taccactatggagtcagcgcctgcgagggctgcaagggtttcttccgccgaagcatccag
aagaacatggtgtacacctgtcatcgcgagaaaggctgcatcatcaacaaggtcacccgc
aaccgctgccagtactgccgcctgcagaagtgtttagaagtgggcatgtccaaggagtcg
gtgaggaacgaccggaacaagaagaagaaggaggagaagaagcccgagtgtccggagatc
tacgtgctgagtaccgagacggagcagatgatcgaacgtgttcgcaaggcccataaggag
acttttccctcgctctgtcagctgggcaaatacaccacgaataacagtgcagagcaccgc
gtggctctagacgtaaacctatgggataagttcagtgagctgtccactaagtgtatcatc
aagacggtggagtttgccaaacatctgccgggcttcaccaccctcactatcgctgaccag
atcaccttgctcaaggctgcctgtctggacatactgattctgaggatatgcacgcgctac
actccagaccaggacaccatgaccttctcagacgggctgactctgaacaggacccagatg
cacaacgcgggcttcggcccgctcacagacctggtgttcgccttcgcccaaacactcctc
cctctggagatggacgacgccgagaccggcctgctcagcggcatctgtctgctgtgtgga
gaccgtcaggatctggagcaggcagacaaggtggacttgctacaggagcccctactggag
gctctgaagatctacgtgaggaagaggaggcctcacaaaccgcacatgttccccaagatg
ctgatgaagatcacagacctcaggagcatcagcgccaagggagcggagcgagtgatcact
ctgaagatggagatcccaggctccatgccccctctcatccaggagatgctggagaactca
gagggcctggagggccagggggccagcggaggccgctccagcggaggaggggccccacca
ggcagctgcagccccagcctgtcccccagttcagcccgcagcagcccccctgcaccctcc
ccttag
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