Salvelinus namaycush (lake trout): 120044459
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Entry
120044459 CDS
T07522
Symbol
npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1 isoform X1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120044459 (npc1l1)
Transporters [BR:
snh02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
120044459 (npc1l1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
Folate_rec
Motif
Other DBs
NCBI-GeneID:
120044459
NCBI-ProteinID:
XP_038845041
UniProt:
A0A8U0UAR1
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Position
Sna1:complement(44356444..44368530)
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AA seq
1348 aa
AA seq
DB search
MGRPTMSRATALLTLLACLVVLEARHEPGYCAFYEECGKNPTVAGSLLPPIIPCLNYSRA
RALEGAHYQQLKKVCPMLDRGEGSTTACCSIKQLKSLEMSLMLSKAVLIRCPSCADNFAH
LHCINTCSPDQTTTVNVTRTMNVNSSGIIKEAVVGYQAYLSTSFADKSFESCKNVRIPAT
GGYAIATMCGRYGSALCTAQRWYDFQGDSSNGLAPLDIDFRLIPEGVTEGIPDGVVPYAG
RALGCNEMTPTGAEVCSCQDCQASCPVVPSPPPPAEPFTIGGVDGYLVLCVIFLCVLILA
FLLFVLSTYLLRKEKGKDSEKGKGKGKGMDKNGNNVSERLIEPWEVTCTDKNSLATQEFL
GSGFQAWGTLIASHPLKVLLVSAVVIAAFATGLMHIELTTDPVQLWSAPNSRARMEKDFH
DKHFDPFFRTNQLILTAPGRPGHFYDSLLFGKQNFSGIIAKDLILELLELQKKIQNIEFW
SNDLNRTASLKDVCFAPLNPSNPKLTDCAVNSLPQYFQNSVDNLNAKVNMTELGLTKEVD
WRDHFIYCVNSPLSFKDITDLQLSCMADYGAPVFPFLAVGGYENEGYTTAEALILTFSLN
NYPRDSVKFKVALEWEQRFLDIVQEYQKSPGNPFTFAYMAERSLEDEINRTTVEDIPIFM
ISYAVIFVYIAVALGEYTSFSRILVDSKFLVGLGGILVVGCSVLASMGFYAWIGIPSSLI
ILQVVPFLVLAVGADNIFIFVLEYQRDARRPGEKREEQIGRVLGNVAPSMLLCSLSESVC
FFLGALSTMPAVKSFALYAALAVLMDFVLQMTAFVALLSLDARRQDGNRCELACCVTVKT
TAPSKPNEGFLLPVMRKYYAPVLLHPVTRVIVMVVFIFMFISSIYLMFYVTVGLDQELAM
PQGSYMLEYFKYLYAYFEVGVPTYFVTTKGFNFSSITGMNATCSSVGCDPFSLTQKIQYA
TEYPDLSYLAIPANSWVDDFIDWLNPGSKCCRLYSFGPNKGKFCPASESAFLCGQKCMKS
PVNGVLRPDMEQFNRFLPDFLGNRPDLQCPKGGLGAYDKAVITDESGEIIATRFMAYHTA
LTTSKEFTAALKIARELAHNITLSMRAIPGTSPDFEVFPYTVTYVFYEQYLTIVSEGLFN
ISLCLLPTFVVCCLLLGMDLRSGALNLLTIIMITVDTVGVMTLWGIDYNAVALINLVTAV
GISVEFVSHMTRSFAMSIQPTHVERAKEATATMGSAVFAGVAMTNLPGIVVLAFAKAQLI
QIFFFRLNLVITLLGMAHGLIFLPVLLSYFGPGVNKAVLLRLQQAKAQALELSSSTKNIY
DNIGYEDQENSPNPDTTPPETISEEQLK
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgggtagacccactatgagccgtgccactgccctgctcacactcctggcctgtctggtt
gtcttagaggcccgtcatgagccaggatactgtgccttctacgaggagtgtggtaaaaac
ccaacggtggcgggatccctcctcccccccataatcccctgcctcaactatagccgcgct
cgagccctcgagggggcgcactaccaacaactcaaaaaggtgtgccccatgctggaccgt
ggagagggcagcaccaccgcctgctgctctataaagcagctcaagtccctggaaatgagc
ctgatgctgtccaaggcagtgctcattcgctgcccctcctgtgctgacaactttgcccac
ctccactgcatcaacacctgcagccctgaccagaccacaaccgttaacgtgacacgcacc
atgaacgtcaacagctcggggattatcaaagaggctgtggtgggttaccaggcctacttg
tccacctcatttgctgacaaatcctttgagtcctgcaagaacgtgaggattcccgccacg
ggggggtatgccatcgctaccatgtgtggacgctatggctcagcactgtgtacggctcag
cgctggtatgacttccagggagactccagtaatggcctggccccactggacatcgacttc
aggctgattccagaaggggtcaccgaggggatacccgatggggtagtgccttacgctggg
agggcgctggggtgtaacgagatgaccccaacaggggcagaggtttgctcctgccaggac
tgccaggcctcgtgcccggtcgtaccctctcccccaccccccgcagaacccttcaccatc
ggaggggtggacggctacctggtgctatgtgtgatcttcctctgcgttctcattctagcc
ttcctgctctttgtgctctccacctacctcctgaggaaggaaaagggcaaggactctgag
aaagggaaaggaaaggggaaagggatggataagaatgggaacaacgttagtgagaggctg
attgaaccgtgggaggtgacgtgtacagacaagaacagcctggctactcaggagttcctg
ggctctgggttccaggcatggggcaccctcattgcctcacaccccctcaaggtgctgcta
gtgtcggctgtggtcatagctgctttcgccacaggactcatgcacatcgaactgaccacc
gaccctgtccagctgtggtccgccccaaacagccgcgcccgtatggagaaggacttccac
gacaagcactttgacccattctttagaaccaaccagctgatcctgacagcgccgggccga
cctggtcacttctacgactcgttgctgttcgggaagcagaacttcagtggaatcattgcc
aaagacctgatcctggaacttctagagctgcagaagaagattcagaacattgagttctgg
tcgaatgatctgaaccgtacggcaagtctgaaggatgtgtgcttcgcgcctctcaacccc
tccaaccccaaactgaccgactgtgctgtcaacagcctgccccagtacttccagaacagt
gtggacaacctcaacgctaaagtcaacatgacggagctgggcttgaccaaggaggtggac
tggagagaccacttcatctactgcgtcaactctcccctgtcgttcaaagacatcactgac
ctgcagttgagctgcatggctgactatggagcaccagtcttccccttcctcgcagtggga
ggatatgagaatgaaggctacactacagcagaagctctcatcctgacattctccctcaat
aactaccctcgagacagcgttaagttcaaggtggccctggagtgggagcagaggttcctg
gacatagtccaagagtaccagaagagtccaggcaacccgttcacctttgcgtacatggct
gagaggtcactggaggatgagattaacaggacgacagtggaggacatccccatcttcatg
attagctatgctgttatctttgtgtacatcgctgtggctctgggggagtacacctccttc
agtcgaatactggtggattcgaagttcctggttggtctgggtggtatactggtggtgggc
tgctctgtcctggcctccatgggtttctacgcctggatcggtatcccctcctctctgatc
atcctccaggttgtccccttcctggtgctagccgtaggagctgacaacatctttatcttc
gttctggagtaccagagggacgcacggaggccaggcgagaagagggaggagcagatcgga
cgtgtccttggaaatgtagctcccagcatgctcctgtgctctctctccgagtctgtctgc
ttcttcctgggcgctctgagcaccatgcctgctgtcaagtcctttgctctgtacgctgcc
ctggctgtgctcatggacttcgtgctgcagatgacggccttcgtggcgttgctgtccctg
gacgccagacggcaggacgggaaccgctgcgagctggcctgctgcgtcaccgtcaagacc
acggccccctccaaacccaacgagggtttccttctgcccgtcatgaggaaatactatgcc
cccgtcctcctccaccccgtcaccagggtcatagtgatggttgtgttcatctttatgttc
atctcctccatctacctgatgttctatgtgacagtgggcctggatcaggagctggctatg
ccccagggttcctacatgttggagtatttcaagtacctgtatgcatactttgaggtgggc
gtcccgacctattttgtcacaacaaagggctttaacttctccagcataacgggtatgaat
gcaacctgctccagtgtgggctgtgaccccttctctctcactcagaagatccagtacgcc
actgaataccctgacctatcttacttggccatcccagcaaactcgtgggtggacgacttc
attgactggctaaaccctggatccaaatgctgtcggctctattccttcggtcctaacaaa
gggaaattctgtcccgcgagcgaatcggccttcctgtgtgggcagaagtgtatgaagagt
cccgttaacggggtactgaggcccgacatggagcaattcaaccgcttcctaccagacttc
ctaggcaacaggcccgacctgcagtgccctaagggaggtctaggagcctatgacaaggct
gtgatcacagacgagagtggagaaattatagccaccaggttcatggcgtaccacacggcc
ctgaccacctccaaggagttcactgcagctctaaaaatagccagagagctggcccacaac
atcaccctcagcatgagagccatacctggcacatccccggactttgaggtcttcccctac
acggtgacctatgtgttctatgaacagtacctgaccattgtgtctgagggactgtttaac
atctccctgtgcctactgccaaccttcgtggtgtgctgtctgctactgggcatggacctg
cgctccggcgctctcaacctcctcaccatcatcatgatcaccgtggataccgtgggcgtc
atgacactgtggggcatcgactacaacgctgtggctcttatcaacctggtcacggcggtg
ggtatctctgtggagtttgtatctcacatgacacgttcctttgccatgagcatccagcct
acacatgtagagagagccaaggaggctactgctactatgggcagtgcggtgtttgctggc
gtcgccatgacgaacctgcctggcatagttgtgttggcatttgccaaagcccagctcatc
cagatattcttcttccgtttaaacctggttatcactctgctgggcatggcccatggtctc
atattcctgcccgtgctgctcagctacttcggtcctggagtgaataaggcagtgttgcta
cggctacagcaggccaaggcccaggcgctggagctgagtagcagcaccaagaacatctat
gacaacatcggctatgaagaccaggagaacagccccaacccagacaccacccccccagag
acaatctctgaggaacagctaaaataa
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