Salvelinus namaycush (lake trout): 120053287
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Entry
120053287 CDS
T07522
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
120053287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120053287
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120053287
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
120053287
NCBI-ProteinID:
XP_038856351
UniProt:
A0A8U1ET26
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Position
Sna9:complement(44478713..44504019)
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AA seq
1412 aa
AA seq
DB search
MFNWVVKVVPQPPDAPGSLGQETANPAPASPSLQEVQREDERNGMIKWIAEGLSKVVPQP
DDKYREDIREEEEEETEVYNMKDVPDAEPLPHIPVVEIFSDDEEEDRVPQFPLKVVNWIK
NVIPQPVMLPAGYVEAQSKAQSKRSSLDKVLSPPPESLKGDEDSQNSNVVGWFVTGLGLK
MPQPVARSRDDVEVVQNVSKQPKAVDLVLEEVVEADLKDLNQEVPSKAMQSEPPQPFKPA
QTTQPTQTTQSQPAQPKQPVKPEEPEQTLPNVPESTTPSLEDAETQTGRWTPFIESIKRE
AEGVAMATMEERMTQERVDLVRMAEEVARHTAETAIRQMQEAQSIKLSIHSQEAILEEDE
DPELHMLREEESEVEHTKNKMTECQVCPAKEEPVDAAKSVAQSERDSASPDVEPEPQEEL
KSQRASPSPPPSPEPDPVKTAEPDPKPKAQDAKVAPEPVTQQPQKAEGAEDGTAPDTTTK
EEGETAEEGGCGVPASCDAVKSCLMRVPHVPACLDSFNNLLKEHNITPPKLPPMPQLPTN
LSQFTSQVTQLVPSLPPELAQELSQMPKQKQQNPDLEMDQMIRQVPLHHRPPTRTPSPSS
PNSTLEMPNVPSYPQLPPISLSRQLSGLSNPAFHIEDDPTSARPSASSRLSVHPAVNVED
VDSGGGGHHRHIHQILTPQDPNLKTLTVPRVSKASRQRKNLHSQSEDDDEEETETAVRAW
PSQSSILSGDDGLKERPASSASQASYVVNERLQELVKMFKERTERAKEKLIDPDDSDDDS
PTASPVRAPTPPPAPPEEPEEEAQPASPEREMEEQQTQSRLCCKVTPPRWIRALLHYRFP
SSIDPFTNLVYVLWLFFVTLAWNWNVWLIPMRWAFPYQTPSNIYLWLLADYLCDLIYILD
IMVFQPRLQFVRGGDIVFDKKDMRKNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPR
LLKVMSFFEFNDRLEAILTKAYVYRVIRTTTYLLYCLHCNACLFYWISAYEGLGSTKWVY
DGKGNSYIRCYYFAVKTLITIGGLPEPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVGA
ATSGQTYYRACMDNTVKYMASYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMR
LDIAVDVNYDIVSKVSLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAG
EVQVVGGPDGKTVFVTLKSGSVFGEISLLAVGGGNRRTANVVAHGFTNLFILDKKDLNEI
LVHYPESQKLLRKKARNMLTKDKKPQEPPKEPAQVIPPRTETPKLLKAALEMARQKTGLK
GTLAKIKENTNISSISLQPSMSSSLTPLSPVSPVSSLDPERKSGIMSPTSDSSTLLRPAS
HCHRGETLSKEQDNVAEEEAGESGERKEKRKP
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggttcctcagccccctgacgcccctggctccctggga
caggagacagccaatcccgcacctgcatcaccatcactgcaggaggtacaaagagaggac
gaaaggaatgggatgattaagtggatagcagagggactgagcaaagtggtgcctcagccg
gatgacaagtacagagaggatattcgagaggaggaggaggaggagacagaggtttataac
atgaaagatgtgccagacgcagagcccctcccacacatacctgtggtggagatcttttca
gacgatgaggaagaggatcgggtaccacagttccccctcaaagtggttaactggattaag
aatgttattcctcagcctgtgatgctccctgcaggttacgtagaggcccagagtaaggcc
cagagcaagaggtcatctcttgacaaagttttgtcgccacctcctgagtctctcaaaggt
gacgaggactcacaaaactccaatgtcgtgggctggtttgtgacgggcctcggcctcaag
atgccacagcctgtcgcgagatcaagagatgacgttgaagttgtgcagaatgtctctaaa
caacccaaagcagtggacctggttctggaggaagtagtagaagcagacctgaaggatctg
aatcaggaagtgccatccaaggctatgcagtcagaaccaccacagccttttaagcccgca
cagacgacacagccaacacagacgactcagtcacagccggcacagccaaaacaaccagtg
aaaccagaagagcctgaacagactcttccaaatgtgccagagtctacaacaccatcgctg
gaggatgctgagactcagacgggcaggtggactcccttcatagagagcatcaagagagag
gctgagggcgtagctatggctaccatggaggaacggatgacccaggagcgagtggatttg
gtgcgaatggcggaggaggtggccagacacacagctgagacggccatcaggcagatgcaa
gaggcacaatcaatcaagctttccattcacagccaggaagccattctggaagaagacgag
gacccagagttacacatgctacgggaggaggagagtgaggtggagcacactaagaataag
atgacagagtgtcaggtgtgtcctgctaaggaggagccagtggatgcagcaaaaagtgtt
gctcagtcagagcgtgactctgcatcacccgacgttgaaccagagccccaggaagagcta
aagtcccagagggcctctccatcccctcctcccagcccagaaccagatccagtcaagaca
gcagagcctgaccctaaaccaaaggcccaggatgccaaagtagcacctgaaccggtgacc
caacaaccacagaaagcagagggggcagaggacggaaccgcacctgacaccactaccaag
gaggagggggagactgcagaggagggtggctgtggtgtccctgccagctgtgatgcagta
aagagctgtctcatgcgtgttccccacgtgcctgcgtgcctcgacagcttcaacaacctg
ctgaaagagcacaacatcacccctcctaaacttccccctatgccccagctccccaccaat
ctctcccagtttacctcccaggtgacccagctagtgccctctctccccccagaacttgcc
caagagctctcccagatgcctaagcagaagcagcagaatcctgacctggagatggaccag
atgatccgccaggtccccctccaccaccgccccccgacccgcaccccctccccgtcctcc
cccaatagtaccctggagatgcccaacgtgccctcctacccccaactgccccccatcagc
ctgtccaggcagctgtcagggctttccaaccccgccttccacatcgaggacgaccccacg
tccgctcggccctcagcgagctccaggctcagtgtgcaccctgctgtcaacgtggaggat
gtggattcaggcggaggggggcaccatcgacacattcaccaaatcctcaccccccaggac
cccaacctcaagaccctgaccgtacccagagtgtcaaaagccagccgccagagaaagaac
ctgcactctcagagtgaggatgatgatgaagaggagactgagaccgcagtgagggcgtgg
cctagccagtccagcatcctcagtggagacgatgggctgaaggagcggcctgcgtcgtcc
gctagccaggccagctacgtggtgaacgagcgcctacaggagctggtcaagatgtttaag
gagaggacagagagggccaaagagaaactcatagacccagatgactctgatgatgacagt
cccactgcctcccctgtgagagctccaacacctcctcctgcacctccagaggagccggag
gaggaagcacaaccagcttcccctgagagggagatggaggagcagcaaacccagtctaga
ctgtgctgcaaggtgacgcctcctcgctggatcagagccctgcttcactaccgcttcccc
tctagcatcgaccccttcaccaatctggtctatgtgctgtggctatttttcgtcaccttg
gcgtggaactggaacgtgtggctgatcccgatgcgctgggccttcccctaccagacccct
agtaacatctacctgtggctgctagccgactacctgtgtgacctcatctacatcctggac
atcatggtcttccagccccgcctgcagtttgtccggggtggcgacatagtgtttgacaaa
aaggacatgcgaaagaattacatgaaaactttccggttcaagatggatgtcatcagtctt
gtgccactggaattgttctattttaaaactgggatcaacccactcctccgcttcccacgg
ctactaaaggtaatgtctttcttcgagttcaacgaccgtcttgaggccatcctgaccaaa
gcctatgtttacagagtgatccggaccaccacctacctgctgtactgcctccactgcaac
gcctgtctgttctactggatctctgcgtatgaaggtctgggctccacgaagtgggtctat
gatgggaagggcaacagttacatccgctgctactactttgctgtgaagactctgatcacc
attggtggactgccggagcccacaacgctctttgaaatcatctttcagctcatcaactac
tttgtaggagtgtttgccttttccatcatgataggacagatgagagatgtggttggtgca
gccacttccggacagacttactacagagcatgcatggacaacactgtcaaatacatggcc
tcctaccgtatccccaaagacgtgcaaaaccgggtcaaaacctggtacaactacacctgg
cagtcccagggcatgctggatgaacaggagcttctggtccagctcccagacaagatgagg
ctggacatcgctgtggatgtcaactatgacattgtcagtaaagtctctctcttccagggt
tgcgacagacagatgatctttgacatgttaaagagtctgaggtctgttgtttacctcccg
ggggactatgtctgcaaaaagggcgaggttggacgggagatgtacatcatcaaggccggg
gaggtgcaggtggtgggcgggccagacgggaagaccgtgtttgtcacactgaagtcgggg
tcagtgtttggggaaatcagcttgcttgcagtgggtggaggaaacaggagaacagccaac
gtagtggctcatggcttcaccaacctgttcatcctggacaagaaggacctcaatgagatt
ttagtgcattaccccgagtctcagaagctgctccgcaagaaggcaaggaatatgctgaca
aaagacaagaagcctcaggagcctccgaaggagccggcccaggtgatccctcctcggaca
gagacacccaagctacttaaagctgctctggagatggctcgtcagaaaacaggcctcaaa
gggacccttgcaaagattaaggagaacaccaacatatccagtatttcgcttcagccctca
atgtcctcctccctgacccccctgtccccagtctctccagtctccagtctggacccagag
cgcaagtctggcatcatgtccccaacctcagacagctccacgttgctccgccccgcctcc
cattgtcacagaggtgagacgctgtccaaggagcaggacaacgtggcggaagaagaggca
ggagagagtggggagaggaaagaaaagagaaagccatga
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