Sulfuriferula nivalis: SFSGTM_25510
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Entry
SFSGTM_25510 CDS
T06628
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03030
DNA replication
sniv03430
Mismatch repair
sniv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFSGTM_25510 (dnaE)
03430 Mismatch repair
SFSGTM_25510 (dnaE)
03440 Homologous recombination
SFSGTM_25510 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sniv03032
]
SFSGTM_25510 (dnaE)
03400 DNA repair and recombination proteins [BR:
sniv03400
]
SFSGTM_25510 (dnaE)
Enzymes [BR:
sniv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SFSGTM_25510 (dnaE)
DNA replication proteins [BR:
sniv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SFSGTM_25510 (dnaE)
DNA repair and recombination proteins [BR:
sniv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SFSGTM_25510 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BBP01843
UniProt:
A0A809SA96
LinkDB
All DBs
Position
complement(2681426..2684809)
Genome browser
AA seq
1127 aa
AA seq
DB search
MRIDDAIARAVQDGMPALALTDLSNVFGLLKFYQAARGKGVKPVVGCDVWITNEADRDRP
SRLGLLVQNVAGYRALSVLLTRANLENRERGRAEIRLAWFNEIDTTGLIALSGAQLGDVG
QALLAGNLDEARLAAQRWAVLFPDRYYLEIQRTGQPEAENCLNLTLPLAAELAVPVVATH
PIQFLDADDFKAHEARVCIAEGALLGDRRRQKAFTEEQYFKTQAEMLALFADVPDACANT
VEIAKRCSLNLELGKSKLPQFPTPDGMTLDDYLRQRSAEGLAARMQVLYTDAAVREQRYP
EYAARLDFELNTIIQMGFPGYFLIVADFINWAKQNGVPVGPGRGSGAGSLVAYVLNITDL
DPLPYDLLFERFLNPERVSMPDFDIDFCQDGRDRVINYVKDKYGRDAVSQIVTFGTLGSK
SVIRDVGRVLDLPYNLCDQLSKLIPIEGVKPVSLAKALEMEPQLKERYDNEEDVRELFAL
ASKLEDLTRNVGMHAGGVLIAPGQLTDFCPLYQAEGSDSAVSQFDKDDVEKAGLVKFDFL
GLRTLTILDWAMRYVAQLSADGKAPFSLETLPLDDRASYNLLKACKTTAVFQLESRGMKD
LIRRLQPDCFEDVVALVALFRPGPLESGMVDDFINRKHGKAKVDYMHPSLEATLKPTYGV
IVYQEQVMQIAQVMGGYSLGGADLLRRAMGKKKAEEMAEHRDLFVNGAVAKNIDAKQATY
IFDLMEKFAGYGFNKSHSAAYALVAYHTAYLKAHHPAAFMAATLSADMDDTDKVKNFYED
ALATGLEILPPDINRSGYRFAPENTRQIRYGLGAIKGTGEAAIAAIVASREADGAFTDLF
DLVTRVDKRSVNRRTLESLIRAGALDGLNDHRASLLASVGVALDMANQAAANANQVGLFD
DFDSHPETRMSLVEVPRWSEKEQLLQEKTALGFYYSGHPFNAYAAELKSLLKVRLDKLAP
SHNPVLLAGVIVSMRTQVTRRGKMAFVLLDDGTATVEVPIFNEMFERHRDSLKEDQLLLV
EGKVSKDDYSGGLRINVDKLFDVASARTRYAKNLRLRVSPTTSVQQLQAKLDPFRSDAEA
CQVICHLTLPDAETDLILGDSWRVSLHDDLLGALRGYLGTDAVNVVY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcattgatgacgcgatagcgcgggcggtgcaggatggtatgcctgcattggcgttg
accgatttgtccaacgtgtttggcttgctcaagttctatcaggcggcgcgcggcaagggt
gtaaagcctgttgtgggttgcgatgtatggataaccaatgaagctgatcgtgaccgaccc
agtcggttgggtttgctggtgcagaatgtcgctggatatcgggcgttgtcagtattattg
acgcgcgcgaatctggaaaaccgtgagcgcggtcgtgccgagataaggttagcctggttt
aatgagatagataccacgggtctgattgcgttgtcaggtgcgcagttgggcgatgttggt
caggcgttactggcgggcaatctggatgaagcccggctggcagcccagcgctgggcggtg
ttattccctgatcgttattatctggaaattcagcgcaccgggcagccagaagcggaaaat
tgcctgaatctgaccttgccgttggctgcggagttagctgtgccagtagtggccacacat
cctatccagttcctcgatgccgatgattttaaggcgcatgaagcgcgggtctgtattgcc
gaaggtgcattgctcggcgacaggcggcggcagaaagcgtttactgaagaacaatatttt
aaaacgcaggcagaaatgctggcattgtttgccgatgtgcctgatgcctgcgcgaacacg
gtggaaatcgccaaacgctgttcgctgaatttggagctgggcaaaagtaaattgccgcag
tttcctacgcctgatggcatgacgctggatgattatttgcggcagcgttcagcggaaggg
ctggctgcacgtatgcaggtgttatataccgatgcagcggtacgagagcagcgttatcct
gagtatgcggcacgcctggattttgagctgaataccattattcagatgggtttcccggga
tacttcctgattgttgcggattttatcaactgggctaaacagaatggcgtgcctgtcggt
cctggacggggttcgggtgctgggtcgctggttgcgtatgtgctgaacattactgatctg
gatcctttgccttatgacttgctgtttgagcggtttttgaatcctgagcgggtatccatg
cccgactttgatatcgacttctgtcaggatggtcgtgaccgcgtcatcaattacgtcaag
gataaatacgggcgcgacgcggtttcgcagattgtgacctttggtacgctgggttccaag
tcagttatccgtgacgtcggccgcgtgctggatttgccttataacttgtgcgatcagcta
tcgaaactgataccgatagaaggcgtcaaacccgtctcgctggcgaaagcgctggagatg
gagccgcagctcaaagagcgttatgacaacgaagaggatgtgcgcgaactgtttgcgctg
gccagcaagctcgaagatttgacacgcaacgtcggtatgcacgcgggtggcgtgctgatt
gcgcctggacaactaaccgacttctgtccgctgtatcaggcagagggttcggattcggct
gtttcgcagtttgataaggatgacgttgaaaaagcgggtctggttaaattcgactttttg
ggtttgcgcactctgactattctggactgggcgatgcgctatgtggcgcaattgtccgcg
gacggtaaagcaccgttcagtctggaaactttgccgctggacgacagagcgagctataac
ctgctcaaggcgtgcaagaccacggcggtattccagctggaatcgcgtggtatgaaagat
ttgatacggcgtttgcagcctgactgttttgaagacgtggtggcgctggtggcgctgttc
cgtcccggtccgctggagtcaggcatggtggatgactttatcaatcgtaaacacggtaaa
gccaaggtcgattacatgcatccgtcactggaagcgacgctcaagccgacttacggtgtc
atcgtttatcaagaacaggtgatgcaaatcgcgcaggtgatgggcggttattcccttggt
ggtgcggacttgctgcggcgcgcgatgggtaagaaaaaagccgaggaaatggccgagcac
cgcgatctcttcgttaatggcgcggtggcgaaaaatatagatgccaaacaggcaacctat
attttcgatttgatggaaaagtttgcaggttatggttttaataaatcacactcggcagct
tatgcgctggtggcgtaccacactgcgtatctgaaagcacaccaccctgctgcattcatg
gcggcgacgttgtcggcggatatggatgacaccgataaggttaaaaacttctacgaagac
gcgctggcaaccgggctggaaatattgccgcccgatattaatcgctcgggttatcgtttc
gctccggaaaatactcgacaaatacgctacgggctaggagcaatcaagggcacgggtgag
gcagcaattgcagcaatagtagcttcgcgcgaagcagatggcgcatttacggatttgttt
gatctggtcacgcgcgtggataaacgcagcgtcaatcgccgcacgctggagtcattgata
cgcgcgggtgcgctggatgggctgaatgatcatcgcgcatcattgctggcttcggtcggc
gtggcgttggacatggcaaatcaggcagcggcgaatgccaatcaggtaggcttgtttgat
gattttgacagccatccggaaacgcggatgagtctggtcgaagtgccgcgctggtcggaa
aaagaacagttgctgcaagagaaaacggcactaggtttctattacagtggtcatccgttc
aatgcctatgccgccgaattaaaatcgctgctcaaagtgcggctggataaactggcgccc
agccataaccccgtgctgttggcaggtgtcattgtgtccatgcgtacgcaggtgacgcgt
cgcggcaaaatggcatttgtgttgcttgatgatggcacagccacggtagaagtccccata
ttcaacgaaatgttcgaacgccaccgtgatagcctgaaagaagaccagttgctactggtc
gaaggcaaagtcagcaaggatgattattctggtggtttgcgtatcaacgttgacaaactg
ttcgacgtcgccagcgcacgaactcgttatgctaagaacctgcgcctgcgggttagcccc
acaaccagtgtgcaacagttgcaagccaagttagacccgttccgcagtgatgcggaagct
tgtcaggtgatctgtcatttgactttgcctgatgcagagacggatctgattttgggcgat
agctggcgggtgtcgttgcatgatgatttgttaggggcgttgcgggggtatttggggacg
gatgcggtgaatgtggtgtattaa
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