Staphylococcus nepalensis: BJD96_05945
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Entry
BJD96_05945 CDS
T05272
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
snl
Staphylococcus nepalensis
Pathway
snl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJD96_05945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snl03400
]
BJD96_05945
Enzymes [BR:
snl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BJD96_05945
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BJD96_05945
DNA repair and recombination proteins [BR:
snl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BJD96_05945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
A2L_zn_ribbon
NFACT_N
YhfH
DZR
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ATH59872
UniProt:
A0A291JJE3
LinkDB
All DBs
Position
1275409..1276281
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AA seq
290 aa
AA seq
DB search
MPELPEVEHVTRGIKPFVKGQKIEEVIFSDKVIEGKDKGKETIIKGLALDTFKRYTEGYT
IYDIERRSKYIVFYIENNSEQRILISHLGMAGGFFVVDKLEDINVPNYRKHWHVIFKLNN
DKLLVYSDIRRFGEIRNVASFDAYPSFLEIAPEPFDKEALSHYMAWFDKRLYQNKPIKQM
ILDHRVISGCGNIYACEALFRAGINPARKSKELNHQEKEMLFYYVREVLEAGIKYGGTSI
SDYRHADGSTGTMQMHLNVYKQKTCKVCGNDIETQVIATRNSHFCPTCQK
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactacctgaggttgaacatgttacaagggggattaagccttttgtaaaaggg
cagaaaattgaagaagttatcttttctgataaagtgatagagggtaaagataaaggcaaa
gaaacgattataaaaggtttagcattagatacatttaaacgttatactgaaggttatacg
atatatgatatcgaacgacgaagtaaatatatcgttttttatattgaaaataattctgaa
caaagaatattaattagtcatctaggcatggctggtggattttttgttgtagataaatta
gaagacatcaacgtccctaattaccgtaaacattggcatgtgatttttaaattaaataat
gataaactacttgtttattcagatattcgtagatttggagaaattagaaatgtagcttct
tttgacgcatatccatcattcttagagattgcgccagaaccttttgacaaagaggcctta
tcacactatatggcttggtttgataagaggttatatcaaaataaaccaatcaaacaaatg
attttagatcatagggtgatttctggttgtggtaatatttatgcttgtgaagcattattt
agagccggtattaaccctgcacgcaagtctaaagaattgaaccatcaagaaaaagaaatg
ttattttattatgttcgtgaagtattagaagcgggtattaaatatggtggtactagcatt
tcagactatcgtcatgctgacggtagcacaggtacgatgcaaatgcatttaaacgtatat
aaacaaaagacatgtaaagtgtgcggaaatgatattgaaacgcaagtgattgcaacacgt
aatagtcatttctgcccgacatgtcaaaaatga
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