Spinacia oleracea (spinach): 110788994
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Entry
110788994 CDS
T05137
Name
(RefSeq) uncharacterized protein LOC110788994 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110788994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110788994
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110788994
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110788994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110788994
NCBI-ProteinID:
XP_021849327
UniProt:
A0A9R0IHA4
LinkDB
All DBs
Position
2:100515935..100538394
Genome browser
AA seq
2378 aa
AA seq
DB search
MQEFSATVASHIRFLLQSLNGSNSDSVLQELCQFTEQGLEGSLLIMQSLLDFMNIFETEA
KNVHLHPVISSVFRFILDKPNFSTVLCQSLRKLTVRDGFLENLSNALGLSLSEKIAVGLA
FSESENSDARLVGTNFCMRQIEGLFANPSTIESTEKIQNIFMFLHRCEGLSKHVDTFTQM
LSLMPLKEGVPFILAPMVPDDLNETKFLSDCRSMDLFYDSNEDDFDAIVAEMEKEISMAD
VMKELGYGCTISASKCKEILSLFMPLTEASIARILGIVVRSHAGLEENTSTFSSFLSAIG
SNPLSDLPFLSSWDVNVLVETIKQLAAETNWVGVMENLDHEGFYIPNENAFTFFMTIFKH
ACQDSFPLHAICGSVWKNSEGQLSFLKYAVSAPSESFTFAHSIRQLVYVDSVHGLQSQPG
QSNYAWLCLDLVDVLCQLAERGHAATIQSMLEYPLKHCPEVLLLGVAQIHTTYNLLQHEV
SSTVLPMIIANAGSKGVILHLWHINHYLVLRGFADVLANDPDSIHRILDICQETKILNHV
LERMPFSFAIKLAAVASHKELLDLERWLSDNLMTSKDTFFKECFKYVKEVQSQIVSEENS
NRLHQTASSANPGSQSSLVILKVLKANAQATTSKSLCDEIEKMHVSLMNGSLVQQNDGVT
DLSTSAIETEANSYFQRMFSERFTIDEMVQMLACFKESSDKREQSIFECMISNLFEEYRF
FPKYPERQLGIAAVLFGSIIKHQLVTHLTLGIALRCVLDALRKPADSKMFVFGTKALEQF
INRLDEWPQYCNHILQISHLRGTHLELVAYIEGVLARQSHGGNGPVDQLNITSLGATVNE
ITGSTTSQLGQPLSSPLPIQPRPPVLVDDGNKVASSMNSFTKPLVASSAQSNATSLADAV
GISKTPSPLAASGMLSSSQGVPRSRGGFGSALSIETLLVAAERRETPIEAPSTDVQDKLS
FMFNNIGPSTVEKKATEFLELIKEDCYPWFAQYMVMRRASVEPNYQEMYLKFLDKINSKA
LYKEIVQETYENCKVLLGSELIKSSAEERSLLKNMGSWLGRLTIGRNQVLRSRDIDPKSL
IMEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEIYAMPNLKMNLKFD
IEVLFKNLGVQIKEVTPTSLLRDRVRVVEGNPDFSNKEFVAPQPPISSEDQVAIPEPMEP
PKPQLPVPISPYVVPAEDDKGGSMGFSDQLPSAQGLLQSTGSQSPYSMAQLPPTIPSLGA
HVVVNSKLNTMGLHGHFQRVLPLAMDRAIKEIVPGIVQRSVSIASQTTKELVIKDYALES
AESRIYNAAHLMVASLSGSLAHVTCKEPLRGSISSQLRNMLQGVNIGSEILEQYVQLVTN
DNLDLGCAMIEQAAQEKAVQTIDAEISQQLSMRRKHRESPGSSIYDASIYAQGAMGVLPE
TLRPTPGRLSVSQQRVYEDFVRLPWQNQQSSQSANTTLVAHSPSPAGGSFPRTLSASSGQ
LSANVYSSGLGNTSYGVGAQPVDLVSEELEPSSTQILSTASLSQIRTSDNVGSQRTEIDS
TLVSSSGVPAMESQPVESAASIKESGITSQSPPQGSAPLVSSLAEPSLTTGDALDKYQLV
ALKLETALTSEGGEAEFQSIVSEVPQIILRCVSRDEAGLAVAQKVFKALYENGGSGLHTA
AHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIRRELLNLAEYNIHMAKLL
DAGRNKIATEFAVSLLQTLVNEEPKVISELQTLVEALSKQLAARPGSPELLQQLVETAKI
PAATVGGITSPSTGKDDKNRQARDKKVSQSVASRGEYNNVEIMEPDAASFQKQVSLLFAE
WYRLSELPLGTDAQCIRFILQLHQNGLLRGDDITDRFFRVLLEISVSHFGEVMQSTPQVQ
SSFLAIDIYAKLVYSILKHCPVDQGSGKLFLLPKILTITVRSIQKDADEKKEEFNPRPYY
RLFINWLLDFGSLDLVHEGVNFQVLSAFANAFHTLQPLKVPAFSFAWLELVSHRTFMPKL
LAANSQKGWPFLHRLLVDLFQFMEPFLRNAEMGDLIRFLYKGTLRVLLVLLHDFPEFLCD
FHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLEEMSQAPRILSEVEAAL
KAKQMKADVDEFLRTMQSSPFLSDLKQRLLLSPSEASHAGTCYNVPLINSLVLYVGMQAV
QLLQSRNRSQPQPVSSDPLAVKAALDIFQTLMKDLDTEGRYLFLNAIANQLRYPNTHTHY
FSVILLYLFSDANQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPGYNFWNRTFT
RCAPEIEKLFESVSRSCGGPKPVNESMVGSGGLSDNAH
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagttttcagcgacggtcgccagccatatccgcttccttctgcagagcttgaat
ggatccaactctgattctgtgcttcaagagctttgtcagttcaccgaacaaggtttggaa
ggaagcttattgatcatgcagagtttgttggactttatgaatatatttgagacagaggca
aagaatgttcatctgcacccagttatatcgtcagtttttagattcatattggataaaccg
aatttcagtactgttctctgccagtcccttcgaaagcttacagttagagatggattcctc
gaaaatttatcaaatgcattaggtctctcactttctgaaaaaattgctgttggtcttgca
ttttcagagtcagaaaattctgatgccagactggttgggacaaatttctgcatgagacag
atcgaggggttgtttgcgaatcctagcaccattgaatcaactgagaaaatccagaatatt
tttatgttccttcaccgatgtgagggcctctcaaagcatgtagatacttttacacagatg
ttgagtttaatgcctctgaaagagggcgtgccatttattttggctcccatggtcccagac
gacctgaatgagaccaaatttctcagtgactgcaggagcatggatttgttctatgattcc
aatgaagacgactttgatgctattgttgccgaaatggagaaggagatcagtatggctgat
gtcatgaaagaactaggctatggatgcaccatcagtgcttcaaaatgcaaggaaatattg
tctctttttatgccactaactgaagcaagcattgccaggatactgggcattgttgtccgt
tctcatgctggtctcgaggaaaacacatctactttttcgtcattcctctcagcaattgga
agcaaccctttgtctgatcttccatttctcagttcctgggatgtcaatgtccttgtcgag
acaattaaacaacttgcagctgaaaccaactgggttggagttatggagaatctggaccac
gagggattttacattcctaacgagaatgcttttacatttttcatgaccattttcaagcat
gcctgtcaggattccttccccctccatgctatttgtggttcagtttggaagaattctgag
gggcaactatcctttctgaagtacgcggtatctgcgccatctgaatcatttacctttgcc
cattcaattaggcaactggtgtatgttgattcagtacatggtctacaatctcaacctgga
cagtccaattatgcatggttatgtcttgatcttgttgatgtattgtgccaattagctgag
aggggtcatgcggctacaatccagtcaatgcttgaatatccacttaagcattgccctgaa
gtactactacttggggtagcacaaatccataccacttataatcttcttcagcatgaagtt
tcctctactgttctaccgatgataattgctaatgctggcagtaagggagtaatccttcac
ctctggcacatcaaccattatttggtattgcgtggatttgctgatgttctagctaatgat
ccagacagcattcacaggattttagatatatgccaggaaacaaagattctcaaccatgtc
ttggagcggatgcctttttcttttgctatcaaacttgcagcagttgcttctcacaaggag
cttttagatctcgagagatggctgagtgataatttaatgacaagtaaagacacctttttt
aaggagtgcttcaagtatgttaaagaggttcagagccaaatagtatcagaagagaattct
aacaggctgcatcaaactgcttcatctgctaatcctggctcccagagttctttggtcatc
ttgaaggtccttaaagccaatgcccaagcaacgacttccaaaagtctttgtgatgaaatt
gaaaaaatgcatgtatcgctgatgaatggcagtttggttcagcagaatgacggagttact
gatttatccacctcagctattgaaacagaggcaaattcctatttccagcgcatgttttct
gaacggtttactattgatgagatggttcaaatgcttgcatgtttcaaagaatcctctgat
aaaagggaacaatctatttttgagtgcatgatctccaatctgtttgaagaatatagattt
ttccctaaataccccgagagacagcttggaattgctgctgtattatttggctctatcatc
aagcatcagctagtaacacatctgacacttggtattgcactacgttgtgttttggacgct
ttgcgaaagcctgcagattctaagatgtttgtgtttggtaccaaagcactggagcagttt
atcaatcgtctggatgagtggccccaatattgcaatcatatcttgcagatatctcacctg
cgtggtactcatctagaacttgttgcgtacattgaaggggttcttgcccgacaatcacat
ggtggaaatggtcctgttgaccaactaaatatcacttctctgggagcaacagtcaatgag
ataactggatcgactacttcacagttggggcagccactttcctctcctttgccaattcaa
cctcgccccccagtgctggtagatgatggaaataaagttgcttcaagtatgaatagcttc
acaaagccacttgtagctagttcggctcaatctaatgctacatctttagctgatgcagtt
ggcatttcaaagactccgagtccactggctgcatctggaatgctgtcgtcttctcaagga
gttcctcgtagccgaggagggtttggttctgcattgagcatagagaccctgcttgttgct
gcagaacgaagagaaactccaatagaggctccatcgactgacgttcaggacaaactttca
ttcatgttcaataacatcggtccttctactgtggaaaagaaggccaccgaatttttagaa
cttataaaagaggattgttatccctggtttgctcaatatatggtgatgagaagagctagt
gttgagccgaattatcaagaaatgtatctgaagtttctggacaagatcaattcaaaagcg
ctgtataaggaaatagttcaagagacatatgagaactgcaaggttcttttgggctctgag
ctcataaaatcaagtgctgaagagcgctctttgctaaagaatatggggagctggcttggg
agacttacaattggacggaatcaagttcttaggtctcgtgatattgatcctaagtctttg
attatggaggcttacgagaaaggattgatgattgctgtgattcctttcacctccaagata
ttggaaccttgtcaaagcagtctagcttatcagcctccaaatccttggacaatggggatt
cttgccttgcttgctgagatatatgcaatgccaaacctaaagatgaatcttaaatttgac
atcgaggtgctgtttaaaaaccttggtgttcagataaaagaagtgactcccacttctctt
ttacgggaccgtgtgcgggttgttgaaggaaatcctgatttttcaaacaaagagtttgtt
gcaccacaacctccaatttcttctgaagatcaagttgcaataccagagcccatggagcct
cctaaaccccagcttcctgttccaatttctccgtatgttgttcctgcggaggatgataaa
ggagggagtatggggttttctgatcagcttccttcagctcaaggactgctacaatctact
ggttctcagtcgccatatagcatggctcagttacctccaacaattcctagtcttggagca
catgtcgttgtgaattcgaagcttaatactatgggcctacacgggcactttcagagagtg
ctcccacttgctatggatagagctattaaagaaatcgtgcctggtatagtgcagcgtagt
gtttccattgcttctcaaactactaaggagcttgttattaaggattatgccttggaatca
gctgagagtcgcatatataatgctgcacatctgatggttgctagtctttctggtagccta
gctcatgtgacttgcaaggaacctttgcgtggctcaatatctagtcagctacgcaacatg
cttcaaggagtgaacattggaagtgaaattttagaacagtatgtgcagctcgttactaat
gataacctcgatttgggttgtgcaatgattgaacaagcagcacaagaaaaggctgtgcaa
acaattgacgcggaaatctctcaacaattatctatgagaaggaagcacagagaaagtcct
ggttcctcgatatacgatgctagcatatatgcacaaggtgcgatgggcgtcttgccagaa
actcttcgtcctacccctgggcgcttatctgtttcccagcaacgtgtttatgaggatttt
gtgaggcttccctggcaaaatcaacagtcgagtcaaagtgctaatactacattggttgct
cactctccttcccctgctggtgggagcttcccccgcactttaagtgcttcttcaggacaa
ctaagtgcgaatgtctattcctctggactagggaatactagttatggtgttggtgctcag
cctgttgatcttgtttctgaagagttggaaccatcttcaacacagatactaagcactgct
tctcttagccagattagaacttctgataatgtgggttcccagcgcactgagattgattca
accctggtgtcttcttctggtgttccagccatggaatcacaaccagttgaatccgctgca
agtattaaggaatctggaataacctctcaatcaccaccacagggatctgcgcctttagta
tctagtctcgcagaaccttcattaactactggagatgcactggacaaataccagttagtt
gcactgaagctggaaactgcgctaactagtgagggcggagaagcggaatttcagtctatt
gtttcggaggttccacagatcatactaagatgtgtcagtcgagatgaagctggtttagct
gtcgcacaaaaggttttcaaagctttgtatgagaatggaggtagtggtttgcacactgct
gctcatcttgcaattctagctgcaattcgtgatgtgtgcaagcttgtggtgaaggagctt
acaagctgggtgatttattcggacgaggaacggaagttcaataaggatattactgttggc
ctgataagaagggagttattgaacttggctgaatataatattcatatggcaaagcttctt
gatgcgggaaggaacaaaattgcgacagagtttgctgtttcacttctccaaacgttggtg
aatgaagaacctaaggtcatttcggagcttcagactttagttgaagccctgtctaagcag
cttgctgcgaggcctgggtcacctgagttgttgcaacaactagttgaaacggcaaaaatc
ccagctgctactgttggtggcattaccagtcctagtaccggaaaggatgataagaacaga
caagcaagagataaaaaggtttctcaatctgtggcaagtaggggagaatacaacaatgta
gaaatcatggagccagatgccgctagttttcagaagcaggtttctctactttttgcagag
tggtaccggctatctgaacttcctcttggaactgatgctcagtgtataagattcatttta
cagctacatcaaaatggtttactcagaggggatgacataacagaccgcttcttccgggtt
cttttggaaatctctgtgtcacattttggtgaggtgatgcaatcaactccacaagtgcag
tcctccttcctcgccattgatatttacgctaaattagtatattcaatcttgaagcattgt
ccagtggatcaaggatcaggcaaactctttctcttaccaaagattttaactataactgtg
agatcaattcaaaaagatgccgatgaaaagaaagaggaatttaatcctaggccttactat
aggctctttattaattggctgttagacttcggttcgttagaccttgtgcacgaaggtgtt
aatttccaggttttatcagcttttgcaaatgcattccataccttgcagcctcttaaagta
cctgctttcagctttgcatggcttgagctagttagtcaccgaactttcatgcctaaattg
cttgctgccaactcacagaaggggtggccctttcttcatcgtttattagtagacttattc
cagttcatggagcctttcttgaggaacgctgaaatgggagatttgatacgctttctgtac
aaaggaactctgagagtgctgctggtgctgctgcatgattttccagaattcttgtgcgac
tttcattttagtttttgtgatgtcatacctcccagctgcatacagatgcgaaatattatc
ctcagtgcttttcctcgcaacatgagacttccagatccttcaactccaaacttgaagatt
gatttgctggaagagatgagccaagcacctcgtatattgtccgaagtcgaagcagctctg
aaggcaaagcagatgaaagctgatgttgatgagtttctcaggacaatgcaatcatcccca
tttctgagtgatttgaagcagagattactactttcgcctagtgaggcttcccatgctggg
acctgttacaatgtacctctgatcaattcacttgtgctgtatgttgggatgcaggcagtt
cagctgcttcagtcacggaaccggtcacaacctcagccagttagcagtgatccgttggca
gtcaaagcagcattagatatatttcaaactttaatgaaggatctggatactgaaggccgc
tatctatttctaaatgcgattgctaaccagttgcgttatcccaatactcacacacattac
ttctccgtcatcctcctctatttattttctgatgctaatcaggagatcgttcaggaacag
ataacccgagtactgttggaaagactaattgttaataggccacatccatggggactgctg
attacattcattgaactaatcaagaaccctggatataatttctggaaccgtaccttcaca
aggtgtgcacctgaaatagaaaaattgttcgagtcggtttccagatcatgtgggggtcca
aagcctgttaatgagagcatggttggctcaggaggattgtccgataacgctcattga
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integrated database retrieval system
