Spinacia oleracea (spinach): 110806229
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Entry
110806229 CDS
T05137
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110806229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110806229
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110806229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_12
TPR_17
TPR_16
TPR_14
TPR_8
TPR_9
TPR_7
TPR_19
TPR_CcmH_CycH
ARM_TT21_C
ARM_TT21_N
TPR_15
DUF6584
ARM_TT21_4th
BTAD
TPR_NPHP3
NTF2
ANAPC3
Motif
Other DBs
NCBI-GeneID:
110806229
NCBI-ProteinID:
XP_021867566
UniProt:
A0A9R0KD70
LinkDB
All DBs
Position
5:124419208..124439320
Genome browser
AA seq
1171 aa
AA seq
DB search
MNLTEEDYLIQLKSLEELADSHPDDPSHHFNLGKLIWERGEEWRENAAQHFLMAAKLNPQ
NGEAFRFLGQYYSCVCGDTQRALKCYQRAVSLNPDDSISGEALCNLLDREGKESLEISVC
REASGKSPRASWAFSRLGFLMVHQKKWSEAVQSLQYAIRGYPTCADLWEALGLAYQRLGM
YTAAIKSYGRAMELESSRAFAMIETGNIFLMLGSYRKAIEQLQHALEICPQSACAQYGLA
SGLLALSQECIRQGAFSWATSLLEEASEIAKSSAVLAGNMSCVWKLHADIQLTYAKSFPW
TEGGNLKGEDEFSRSILSWRKARQSAALSANCSYQRALHLAPWQANIYMDVAVAVDLECS
LQESQEDDLSSWKLAEKMLLGSLLLEGDNHEFWMALGCMSDHRALRQHAFIRGLHLDVSL
ASAWAYLGKLYKEEGESQLGRQAFDRARSIDPSLALPWAGMSADMLTREPASDEAYDSCL
RAVQIMPLAEFQLGLAKLALLSNNLLSPEVFGAIRQALQCAPWYPESHNLNGLVYEGRQD
FQSAVASYKLARYALKTSTFHLPHSHFSDLSVNLARALCKAGNVQEAIRELDDLKERGLL
DVGGLQVYAISLWKLGKSDMALSAAKDLATCVPTMKLSSAVASICLICSLLYSISGAGPT
INSILQMPKELLQSAKVSFIISAVDAVDQSSQLQAVVSSSRRSLSSKEEIMEMHLLIALS
KVIRSGYGHSISVQSGIDHLRKALHMYPNGISLRNMLGNLLLSRKQWENDHVVRRCCAVV
AFDPMKNDFRSAYEIIGAEAVACHATTSCKSKYSLSTCKHHDVQGSSLMRLMQRRFRLEP
WNHNARYLLVLNLLQTTRQARYPQHLLDVLKRMTSAALTSQLFLNNTFERYKRFQLLLCS
SELSLLDGDTSCCVSLARDASNLSLSDFYTFFAHLQLCRAHAVEDNHTRLDEEFTQCLKL
RTDYPIGWISLKMIESRHKPQNGSTPSDSGFRDSIKEMKGSESSWLAVYSLFCGLVSQWS
QDFPRAEEFLAEACSLEATESCFFLCHGAVCMELAKMQHGSQYLTMGIRSLKKAQWISSI
QLPFVSLLLAQAEASLGSKLKWDISLSLEWYSWSPETRPAEVYFQMHLLALGSDGSDYGD
PLSWVLRAVHLNPSCLRYWRVLRKLASSGNS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacggaggaagactacttaattcagttaaaatctcttgaagaactcgcggat
tctcatccagatgacccatctcaccattttaatctcgggaaattaatatgggaaagagga
gaagaatggagagagaatgcagcacaacatttccttatggcagctaaattaaatccccaa
aatggagaggcttttagatttttaggtcagtactacagctgtgtttgtggggatacccag
agagctctcaaatgctaccagcgtgctgtttcgctgaatcccgatgactcgatttccggg
gaagcgttgtgtaatttgctggacagagaaggtaaggagagtctggagatttctgtgtgc
agggaggcgtctgggaagtcgccccgtgcctcctgggccttttccagattaggtttcctg
atggtgcatcaaaagaaatggtctgaggctgtccagagtcttcagtatgctatcagaggc
tatccaacctgtgctgatctctgggaagcgttaggtcttgcttatcaacgacttggcatg
tatactgctgccattaagtcgtacgggagagctatggaattggaaagttcaagagccttt
gctatgattgagactggaaatatttttctaatgcttggttcatataggaaggctattgag
cagcttcaacatgctctggagatatgccctcaaagtgcatgtgcacaatatggtcttgcg
tctgggcttcttgctctatcacaggaatgcattaggcagggtgcattttcgtgggccacg
tcactgttggaggaggcatctgaaattgcaaaaagtagtgctgttttggctggtaatatg
tcatgtgtatggaagctacatgctgatatccagcttacgtatgcaaaatcatttccatgg
acagaaggtggtaatctgaagggtgaggacgaattttctaggtcgatcctttcctggcga
aaagctcgccaatcagctgccttgtcggctaattgttcctaccagcgtgctttgcacttg
gctccgtggcaagcgaatatctatatggatgttgctgtggcagtggatcttgaatgctct
ttacaggagagtcaagaagatgatctgagctcctggaagctagctgagaagatgctgtta
ggaagcttgctacttgagggtgacaatcatgaattttggatggcactgggatgcatgtct
gatcatagagcattgagacaacatgcctttatccgaggattgcatttggatgtatctcta
gcttctgcatgggcttatcttgggaagctctacaaagaagaaggtgaaagtcaattggga
agacaagcgtttgacagggctcggagtatagatccctcccttgcattgccgtgggctggc
atgtcagcagatatgctaactagggaacctgcatcagatgaggcttatgacagttgttta
cgagctgtccaaataatgcctcttgctgagtttcaacttggccttgcaaaacttgccctg
ctttcaaacaatctactatctccagaggtttttggagctatcaggcaagctttgcagtgt
gctccttggtatcctgaatctcataatctgaatgggctagtttatgaagggagacaagat
tttcagtctgctgttgcttcgtataagctagcacgttatgccttgaagacttctacattt
cacttgccccattctcatttttcggatttatcagttaatctggctagggctctttgcaag
gcaggaaatgtacaagaagcgataagagaattggacgatttgaaagaaagaggtttactt
gatgttggaggccttcaagtgtatgctatatcattatggaaacttggcaagagtgatatg
gccctatccgctgctaaagatctggctacatgtgttcccaccatgaagctatcctctgca
gtggcatctatttgcttaatttgcagtcttctgtactcaatttctggggcaggaccaact
atcaatagcattttgcaaatgcctaaggagctgttacagagtgcaaaagttagtttcatc
atatctgctgtagatgctgttgatcagagttctcaattacaggctgtggtctcaagtagt
cgtcgttccctttcatcaaaggaagagataatggaaatgcatttgctgattgcgctgagt
aaagtaatcagaagtggatacggacattctatcagcgtgcaaagtggtatcgatcatctt
agaaaggcattgcatatgtatcccaatggcatttctttaagaaatatgcttggaaatttg
ttgttatctcgcaaacaatgggaaaatgaccatgttgtaaggaggtgctgtgctgtagtt
gctttcgacccgatgaagaatgacttcagatctgcatatgaaataattggtgctgaagct
gttgcatgccatgctactaccagctgcaaatccaaatactctctttcgacatgtaaacac
catgatgtgcagggttcatcactaatgcggttaatgcagagacggtttcggctagaacca
tggaaccataatgcaagatacctgctagtacttaatctgctgcaaacaacacgccaagca
agatatccacaacatcttttggatgtgctcaagcggatgacttctgcagctctcactagt
caattgtttttgaacaacacatttgagagatataaaagattccagttgcttctatgttcc
tctgagctcagtttgcttgacggagatacgtcatgctgtgtttctcttgcaagggatgca
tcaaacctttcgctctctgatttctataccttttttgcccatttgcaattatgccgtgct
catgctgttgaagataaccacacaagacttgatgaagagtttacacagtgcttgaagctt
agaactgattaccctattggttggattagtcttaagatgattgaatctcgtcacaaaccc
cagaatggttcaactccctcagattcaggctttagagatagtataaaagagatgaaggga
tcagaaagctcgtggttggctgtctacagtttgttttgtggtttagtttctcaatggtct
caagattttccgcgtgcagaggagtttcttgctgaagcttgttcattggaagctactgag
agctgcttcttcctgtgtcacggtgccgtttgcatggagcttgcaaaaatgcaacacggg
tctcagtatctaacaatgggtataaggagtcttaagaaagcacaatggatttcctccatt
caattgccatttgtttcccttttgttggctcaagcagaggcaagccttggatcaaagttg
aagtgggatattagcctcagtttagaatggtattcttggtcaccagagacaaggcctgca
gaagtgtattttcaaatgcatctgcttgcacttgggtctgatggttcagattatggagat
ccactctcttgggttcttcgagctgttcacttgaatccttcttgcttaaggtattggaga
gtcttgcgcaagctagcttcctcagggaactcttaa
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