Serratia odorifera: NCTC11214_02084
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Entry
NCTC11214_02084 CDS
T06612
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sof
Serratia odorifera
Pathway
sof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11214_02084 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sof03021
]
NCTC11214_02084 (rpoB)
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_02084 (rpoB)
Enzymes [BR:
sof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11214_02084 (rpoB)
Transcription machinery [BR:
sof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11214_02084 (rpoB)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11214_02084 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
VDZ56400
UniProt:
A0A3S4DH33
LinkDB
All DBs
Position
1:1900445..1904473
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKITFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDEIQSIEVPVEYIAGKVVAKD
YIDTNTGELICSANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGVEAEKLAKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
LKSDFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKETEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gttctggacataccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagacccagaagggcagtacggccttgaagccgcattccgttctgtattcccaatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtgttc
gacgtcaaagagtgccagattcgtggtgtgacgttctctgcaccgctgcgcgtcaaactg
cgcctggtaatctacgagcgagaagcaccggaaggtacggttaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgacaacggtacctttgtgatcaacggt
actgagagggttatcgtatctcagctgcaccgcagccctggcgtgttcttcgacagcgat
aagggtaaaacccactcatcgggcaaggtgctgtataacgcacgtattatcccttaccgt
ggttcctggctggatttcgagtttgacccgaaagacaacctgttcgtgcgtattgaccgt
cgccgcaaactgcctgcgaccatcattctgcgcgcgctgaactacaccaccgagcagatc
ctggatctgttctttgaaaagattacgttcgagattcgtgataacaagctgcagatggag
ctggttccagagcgtctgcgtggtgagaccgcttcgtttgatatcgaagccaacggcaag
atctacgtagagaaaggccgtcgcatcaccgctcgtcatatccgtcagcttgaaaaagac
gaaatccagagcattgaagtaccggttgagtacatcgcgggcaaggttgtcgcgaaggac
tacatcgataccaataccggcgaactgatctgtagcgccaacatggagctgtcgctggat
ctgttggccaaactgagccagtcaggccacaagcgtattgaaacgctgttcaccaacgat
ctggaccacggtgcgtacatttctgaaaccgtacgcgtcgacccgactaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgtcctggtgagccgccaacgcgcgaagcc
gctgaaagcctgttcgagaacctgttcttctcggaagaccgctacgatctgtctgcggtt
ggccgtatgaagttcaaccgttccctgctgcgcgacgagatcgaaggttcgggtatcctg
agcaaagacgacatcattgaagtgatgaagaagctcatcgatatccgtaacggcaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggca
gagaaccagttccgcgtaggtctggttcgtgttgagcgtgcggttaaagagcgtctgtca
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggctccagccagctgtctcagtttatggaccagaacaacccg
ttgtcagagatcacgcacaagcgtcgtatctccgcattgggcccaggcggtctgacccgt
gaacgcgccggcttcgaagtgcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccggaaggtccgaacatcggtctgatcaactccttgtccgtgtacgcacag
accaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggttacc
gatgaaatcaactacctgtctgccattgaagaaggcaacttcgttatcgcccaggcgaac
tccaacctggatgaagaaggccgcttcgtggaagacctggtcacctgtcgtagcaagggc
gaatcaagcctgttcagccgcgaccaggttgactatatggacgtatcgacccagcaggtt
gtctccgttggtgcttcactgattccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttcctaccctgcgtgctgacaagccgctggtt
ggtaccggtatggaacgtgccgtcgccgttgactccggcgttaccgccgtagccaagcgt
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaggttaacgaagacgag
atgtacccgggcgaagcaggtatcgatatttataacctgaccaagtacacccgttccaac
cagaacacctgcatcaaccagatgccgtgtgtcaacctgggtgagccaatcgagcgcggc
gacgtgctggcagatggcccgtccaccgatctgggtgaactggcactgggtcagaacatg
cgcgtcgcgttcatgccgtggaacggctacaacttcgaagactccatcttggtctccgag
cgcgtggtacaggaagatcgcttcactaccatccatattcaggaactggcgtgcgtgtct
cgcgataccaagctggggccggaagagatcactgccgacatccctaacgtgggtgaagca
gcgctctccaaactggatgagtccggtatcgtgtatatcggtgctgaagtgaccggtggt
gacattctggttggtaaggtaacgccgaagggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacggttatcgacgtgcaggtcttcacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcaaatcctggaagccggtctgtttgcacgtatccatgcggtgctggtt
gccggcggcgttgaagctgagaagcttgccaagctgccacgcgatcgctggctggaactg
ggcctgaccgacgaagacaagcaaaaccagctggaacagctggcagagcagtacgacgaa
ctgaaatccgacttcgagaagaagctggaagccaagcgtcgcaagatcactcaaggcgac
gatctggcacctggcgtgctgaaaatcgtcaaggtgtatctggcggtcaaacgtcagatc
caaccgggtgacaagatggcaggtcgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggttgacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gccaaaggcatcggtgagaaaatcaaccagatgctcaagcagcagcaggaagtggccaaa
ctgcgtgagttcatccagaaagcgtacgatctgggtgatgacgtttgccagaaagttgac
ctgaacaccttcagcgatgacgaagtattgcgtctggccgagaacctgaaaaaaggtatg
ccaatcgcaacgccagtgttcgatggtgcgaaagaaactgaaatcaagcaactgctggaa
atgggtggtatcccgacttctggtcagattacgctgttcgatggccgtaccggtgagcag
ttcgagcgccaggttaccgttggctatatgtacatgctgaaactgaaccacttggttgac
gataaaatgcacgcccgttcaaccggctcttacagcttggttactcagcagccgctgggt
ggtaaagcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagca
tatggcgcggcttacaccctgcaggaaatgcttaccgttaagtcggatgacgttaacggg
cgtaccaagatgtacaaaaacatcgtggatggcgatcaccgcatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagaaatccgctcgctcggtatcaacatcgaactggaa
gacgagtaa
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