KEGG   Shinella oryzae: K6301_06890
Entry
K6301_06890       CDS       T08112                                 
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
soj  Shinella oryzae
Pathway
soj03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:soj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    K6301_06890 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:soj03400]
    K6301_06890 (uvrA)
DNA repair and recombination proteins [BR:soj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     K6301_06890 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      K6301_06890 (uvrA)
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N BCA_ABC_TP_C DnaJ_CXXCXGXG AAA_29 AAA_16 nSTAND1 RsgA_GTPase AAA_33 AAA_21
Other DBs
NCBI-ProteinID: UPA25903
LinkDB
Position
1373754..1376672
AA seq 972 aa
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGV
PYSPVTGLPIESQTVSQMVDRVIDFGEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRV
KVDGQFYEIADVPALDKKYKHDIDVVVDRVVVRPDLASRLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPT
CDGLGSQQKIDPDLIVPETERTLKDGAIAPWAKSSSPYYNQTLEALGAAYGFKLSNRWSE
LSEKAQNAILHGTDEKIEFNYKDGARSYKTVKTFEGIVPNLERRWKETDSAWSREEIERY
MSAAPCPACNGFRLKPEALAVKINKLHIGETTAMSIRVARDWFEALPEHLNAKQNEIAVR
ILKEIRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIG
LHQRDNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAQGTPE
EVIANPASLTGKYLSGELSVAVPSERRKPKKKKEIKVVGAKANNLKNVTASIPLGVFTAV
TGVSGGGKSTFLIETLYKSAARRIMGAREIPAEHERIDGFEYIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDV
YVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLVTLNQVGLG
YIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEVLHELV
NQGNSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEVIAEGTPEDVVKVERSYTGQFLKEL
LERRPIKRIAAE
NT seq 2919 nt   +upstreamnt  +downstreamnt
atgagcgaactcaagaccatttccatacgcggcgcgcgcgagcacaatctcaagggcatt
gatctcgatctgccgcgcaacaagctgatcgtcatgaccgggctttccggatcgggcaag
tcgtcgctcgcgttcgacacgatctatgccgagggccagcgccgctatgtcgagagcctc
tcggcctatgcgcgccagttcctcgagatgatgcagaagccggatgtggaccagatcgat
ggcctgtctccggccatctccatcgagcagaagacgacctcgaagaacccgcgctcgacc
gtcggaaccgtcaccgagatctacgattacatgcgcctgcttttcgcgcgcgtcggtgtg
ccgtactctccggtcaccggcctgccgatcgaaagccagaccgtcagccagatggtggac
cgcgtcatcgatttcggcgagggcacccgtctttatatcctggctcccatcgtgcgcggc
cgcaagggcgagtacaagaaggaactcgccgagctcatgaagaagggcttccagcgcgtt
aaggtggatggccagttctatgagatcgccgacgtgccggctctcgacaagaaatacaaa
cacgacatcgacgtggtggtggaccgggtcgtcgtgcgcccggatcttgcctcgcgcctc
gccgatagcctcgagacgtgcctgaaactcgccgatggccttgccatcgccgaattcgcc
gataagccgctgccgcctgaggaaaccgccgccggcggctcggcgaacaagtcgctgaac
gagacgcatgagcgcatgctgttttccgaaaagttcgcctgcccggtctccggcttcacc
attccggaaatcgagccgcggctcttctcgttcaacaaccccttcggcgcctgcccgacc
tgcgatggcctgggcagccagcagaagatcgatcctgacctcatcgtgccggaaacggaa
cgcacgttgaaggatggcgcgatcgcgccctgggccaaatcctcctcgccctattacaac
cagacgctggaagcgctcggcgccgcctatggtttcaagctgtccaaccgctggtcggaa
ttgtcggaaaaggcgcagaacgccatcctgcacggcacggacgagaagatcgagttcaac
tacaaggacggcgcgcgctcctacaagacggtgaagaccttcgagggcatcgtgccgaac
ctcgagcgccgctggaaggaaacggattcggcctggtcgcgcgaggagatcgagcgctac
atgtcggccgcgccctgcccggcctgcaacggttttcgcctgaaacccgaggcgctggcg
gtcaagatcaacaagctgcatatcggcgagacgaccgccatgtcgatccgcgtggcgcgc
gactggttcgaggcgctgccggagcacctcaacgccaagcagaacgagatcgcggtgcgc
atcctcaaggagatccgcgagcggctgcgcttcctcaacgatgtcggcctggaatatctg
tcgctgtcgcgcaattccggcacgctgtcgggcggcgaaagccagcgcatccggcttgcc
tcgcagatcggctccggcctgacgggtgtgctctacgtgctggacgagccgtccatcggc
ctgcaccagcgcgacaatgcgcgcctgctggatacgctccggcacctgcgcgacatcggc
aacaccgtcatcgtcgtcgagcatgacgaggatgcgatcctgacggccgactatgtcgtc
gatatcggtcccgccgccggcatccatggcggccaggtcattgcacagggcacgccggag
gaggtcatcgccaatccggcctcgctgaccggcaagtatctttcgggcgagctgtcggtc
gccgttccaagcgaacgccgcaagccgaagaagaaaaaggaaatcaaggtcgtcggcgcc
aaggccaacaacctgaagaatgtcacggcttccattccgctcggcgtcttcacggcggtc
acgggcgtgtccggcggcggcaagtcgaccttcctgatcgagacgctctacaagtcggcc
gcccgccgcatcatgggcgcacgcgaaatccctgcggaacacgagcgtatcgacggcttc
gaatatatcgacaaggtcatcgatatcgaccagtcgccgatcggccgcacgccgcgctcc
aacccggcgacctataccggcgccttcacgccgatccgtgattggtttgcggggcttccg
gaagcgaaagcgcgtggctatcagccgggtcgtttctccttcaacgtcaagggcgggcgt
tgcgaggcctgccagggcgacggcgtcatcaagatcgagatgcacttcctgcccgacgtc
tacgtcacctgcgacgtctgccacggcaagcgctataaccgcgagacgctcgatgtcacc
ttcaagggcaagtccatcgccgacgtgctcgacatgacggtggaggaaggcgtcgagttc
ttcgccgccgtgccggccgtgcgcgacaagctggtgacgctcaaccaggtcggcctcggc
tatatcaaggtcggccagcaggcaaacaccctgtcgggcggcgaggcgcagcgcgtcaag
cttgccaaggaactgtccaagcgttccaccggccgcacgctctacattctcgacgagccg
acgacgggtctgcatttccatgacgtggcgaaactgctggaagtgctgcacgaactggtc
aaccagggcaattcggtcgtcgtcatcgagcacaatctcgaggtcatcaagaccgccgac
tggatcatcgatttcggccccgagggcggcgatggcggcggcgaggtgattgccgaaggc
acgccggaggatgtggtgaaggtcgagcggtcctataccgggcagttcctgaaggagctg
ctggagcgacggccgatcaagcggatcgcggcggaatga

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