Shinella oryzae: K6301_06890
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Entry
K6301_06890 CDS
T08112
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
soj
Shinella oryzae
Pathway
soj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K6301_06890 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
soj03400
]
K6301_06890 (uvrA)
DNA repair and recombination proteins [BR:
soj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6301_06890 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K6301_06890 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
BCA_ABC_TP_C
DnaJ_CXXCXGXG
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
AAA_33
AAA_21
Motif
Other DBs
NCBI-ProteinID:
UPA25903
LinkDB
All DBs
Position
1373754..1376672
Genome browser
AA seq
972 aa
AA seq
DB search
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGV
PYSPVTGLPIESQTVSQMVDRVIDFGEGTRLYILAPIVRGRKGEYKKELAELMKKGFQRV
KVDGQFYEIADVPALDKKYKHDIDVVVDRVVVRPDLASRLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPT
CDGLGSQQKIDPDLIVPETERTLKDGAIAPWAKSSSPYYNQTLEALGAAYGFKLSNRWSE
LSEKAQNAILHGTDEKIEFNYKDGARSYKTVKTFEGIVPNLERRWKETDSAWSREEIERY
MSAAPCPACNGFRLKPEALAVKINKLHIGETTAMSIRVARDWFEALPEHLNAKQNEIAVR
ILKEIRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIG
LHQRDNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAQGTPE
EVIANPASLTGKYLSGELSVAVPSERRKPKKKKEIKVVGAKANNLKNVTASIPLGVFTAV
TGVSGGGKSTFLIETLYKSAARRIMGAREIPAEHERIDGFEYIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDV
YVTCDVCHGKRYNRETLDVTFKGKSIADVLDMTVEEGVEFFAAVPAVRDKLVTLNQVGLG
YIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVAKLLEVLHELV
NQGNSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEVIAEGTPEDVVKVERSYTGQFLKEL
LERRPIKRIAAE
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaactcaagaccatttccatacgcggcgcgcgcgagcacaatctcaagggcatt
gatctcgatctgccgcgcaacaagctgatcgtcatgaccgggctttccggatcgggcaag
tcgtcgctcgcgttcgacacgatctatgccgagggccagcgccgctatgtcgagagcctc
tcggcctatgcgcgccagttcctcgagatgatgcagaagccggatgtggaccagatcgat
ggcctgtctccggccatctccatcgagcagaagacgacctcgaagaacccgcgctcgacc
gtcggaaccgtcaccgagatctacgattacatgcgcctgcttttcgcgcgcgtcggtgtg
ccgtactctccggtcaccggcctgccgatcgaaagccagaccgtcagccagatggtggac
cgcgtcatcgatttcggcgagggcacccgtctttatatcctggctcccatcgtgcgcggc
cgcaagggcgagtacaagaaggaactcgccgagctcatgaagaagggcttccagcgcgtt
aaggtggatggccagttctatgagatcgccgacgtgccggctctcgacaagaaatacaaa
cacgacatcgacgtggtggtggaccgggtcgtcgtgcgcccggatcttgcctcgcgcctc
gccgatagcctcgagacgtgcctgaaactcgccgatggccttgccatcgccgaattcgcc
gataagccgctgccgcctgaggaaaccgccgccggcggctcggcgaacaagtcgctgaac
gagacgcatgagcgcatgctgttttccgaaaagttcgcctgcccggtctccggcttcacc
attccggaaatcgagccgcggctcttctcgttcaacaaccccttcggcgcctgcccgacc
tgcgatggcctgggcagccagcagaagatcgatcctgacctcatcgtgccggaaacggaa
cgcacgttgaaggatggcgcgatcgcgccctgggccaaatcctcctcgccctattacaac
cagacgctggaagcgctcggcgccgcctatggtttcaagctgtccaaccgctggtcggaa
ttgtcggaaaaggcgcagaacgccatcctgcacggcacggacgagaagatcgagttcaac
tacaaggacggcgcgcgctcctacaagacggtgaagaccttcgagggcatcgtgccgaac
ctcgagcgccgctggaaggaaacggattcggcctggtcgcgcgaggagatcgagcgctac
atgtcggccgcgccctgcccggcctgcaacggttttcgcctgaaacccgaggcgctggcg
gtcaagatcaacaagctgcatatcggcgagacgaccgccatgtcgatccgcgtggcgcgc
gactggttcgaggcgctgccggagcacctcaacgccaagcagaacgagatcgcggtgcgc
atcctcaaggagatccgcgagcggctgcgcttcctcaacgatgtcggcctggaatatctg
tcgctgtcgcgcaattccggcacgctgtcgggcggcgaaagccagcgcatccggcttgcc
tcgcagatcggctccggcctgacgggtgtgctctacgtgctggacgagccgtccatcggc
ctgcaccagcgcgacaatgcgcgcctgctggatacgctccggcacctgcgcgacatcggc
aacaccgtcatcgtcgtcgagcatgacgaggatgcgatcctgacggccgactatgtcgtc
gatatcggtcccgccgccggcatccatggcggccaggtcattgcacagggcacgccggag
gaggtcatcgccaatccggcctcgctgaccggcaagtatctttcgggcgagctgtcggtc
gccgttccaagcgaacgccgcaagccgaagaagaaaaaggaaatcaaggtcgtcggcgcc
aaggccaacaacctgaagaatgtcacggcttccattccgctcggcgtcttcacggcggtc
acgggcgtgtccggcggcggcaagtcgaccttcctgatcgagacgctctacaagtcggcc
gcccgccgcatcatgggcgcacgcgaaatccctgcggaacacgagcgtatcgacggcttc
gaatatatcgacaaggtcatcgatatcgaccagtcgccgatcggccgcacgccgcgctcc
aacccggcgacctataccggcgccttcacgccgatccgtgattggtttgcggggcttccg
gaagcgaaagcgcgtggctatcagccgggtcgtttctccttcaacgtcaagggcgggcgt
tgcgaggcctgccagggcgacggcgtcatcaagatcgagatgcacttcctgcccgacgtc
tacgtcacctgcgacgtctgccacggcaagcgctataaccgcgagacgctcgatgtcacc
ttcaagggcaagtccatcgccgacgtgctcgacatgacggtggaggaaggcgtcgagttc
ttcgccgccgtgccggccgtgcgcgacaagctggtgacgctcaaccaggtcggcctcggc
tatatcaaggtcggccagcaggcaaacaccctgtcgggcggcgaggcgcagcgcgtcaag
cttgccaaggaactgtccaagcgttccaccggccgcacgctctacattctcgacgagccg
acgacgggtctgcatttccatgacgtggcgaaactgctggaagtgctgcacgaactggtc
aaccagggcaattcggtcgtcgtcatcgagcacaatctcgaggtcatcaagaccgccgac
tggatcatcgatttcggccccgagggcggcgatggcggcggcgaggtgattgccgaaggc
acgccggaggatgtggtgaaggtcgagcggtcctataccgggcagttcctgaaggagctg
ctggagcgacggccgatcaagcggatcgcggcggaatga
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