Shinella oryzae: K6301_13895
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Entry
K6301_13895 CDS
T08112
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
soj
Shinella oryzae
Pathway
soj02024
Quorum sensing
soj03060
Protein export
soj03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
soj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
K6301_13895 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
K6301_13895 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
K6301_13895 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
soj02044
]
K6301_13895 (ffh)
Enzymes [BR:
soj01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
K6301_13895 (ffh)
Secretion system [BR:
soj02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
K6301_13895 (ffh)
Eukaryotic Sec-SRP protein
K6301_13895 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
AAA_33
Zeta_toxin
AAA_30
AAA_22
6PF2K
DnaB_C
AAA_19
nSTAND_NTPase5
AAA_31
KAP_NTPase
AAA_14
AAA_17
APS_kinase
ArsA_ATPase
AAA
ResIII
DeaD_dimer
Thymidylate_kin
Motif
Other DBs
NCBI-ProteinID:
UPA24226
LinkDB
All DBs
Position
2845609..2847165
Genome browser
AA seq
518 aa
AA seq
DB search
MFETLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALEVVRSFTDAVREKAV
GAEILKSIKPGQMVVKLVHDELVSMLGSEGVSIDLNAAAPVVIMMVGLQGSGKTTTSGKI
ANRLTTRDKKKVLMASLDTRRPAAQEQLRQLGVQTGIDTLPIIAGQSPTDIAARAVQAAK
LGGHDVVILDTAGRTHIDEPLMIEMAEIKRKSNPHEILLVADALTGQDAVNLARNFDERV
GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMGELEEFHPRRVADRILGMGDI
VSLVEKAAENIDAEKAAAMAAKMAKGKFDLNDLADQLRQMQKMGGMGGIMGLMPGMAGMK
DKMSAAGLDDKLFGRQIAIINSMTKAERANPDILKHSRKKRIAAGSGTDASDINKLLKMH
RQMADMMKMMGGKKGGMMKQMMGGLAGKMGLGGLGGGMPDLSKMDPKQLEALAKQAEAAG
IKPGSMPGLGGGGLPGLGGGRLPGLGGLPGLPGLPKKK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaacactccaggaccgccttggctccattctgaatggactgacaggccgtggc
gcgctttccgaggccgatgtctcggcagcgctgcgcgaggtccgccgtgcgcttctggaa
gcggacgtggcgctggaagtggtgcgttccttcaccgatgcggtgcgcgaaaaggccgtc
ggcgccgagatcctgaagtccatcaagcccggccagatggtcgtcaagctggtgcatgac
gagctggtctcgatgctcggctccgagggcgtttcgatcgacctcaacgcggctgccccc
gtcgtcatcatgatggtcggcctccagggctcgggcaagacgaccacgtcgggcaagatc
gccaaccggctgaccacgcgcgacaagaagaaggtcctgatggcctcgctcgacacgcgc
cgtccggccgcgcaggagcagcttcgccagctcggcgtgcagaccggcatcgacacgctg
cccatcatcgccggccagtcgccgaccgatatcgccgcgcgcgccgtgcaagccgccaag
ctcggcggccatgacgtcgtcatcctcgacaccgccggccgcacccatatcgacgagccg
ctgatgatcgagatggcggagatcaagcggaagtccaatccgcatgaaatcctgctcgtc
gccgatgcgctgaccggccaggacgccgtcaacctcgcccgcaatttcgacgagcgcgtc
ggcatcaccggcctcgtgctcacccgtatggacggcgacggccgcggcggtgcggccctt
tccatgcgcgccgtcaccggcaagccgatcaagctgatcggcgtcggcgagaagatgggc
gagctggaggaattccacccccgccgcgtcgccgaccgcatcctcggcatgggcgacatc
gtctcgctcgtcgagaaggcggctgagaacatcgacgccgagaaggcggccgccatggcc
gccaagatggccaagggcaagttcgacctgaacgacctcgccgaccagctgcgccagatg
cagaagatgggcggcatgggcggcatcatggggcttatgcccggcatggccggcatgaag
gacaagatgtcggccgccggcctcgacgacaagctgttcggccgccagatcgccatcatc
aattcgatgaccaaggcagagcgcgccaaccccgatatcctcaagcattcccgcaagaag
cgcatcgccgccggctccggcaccgatgcctccgacatcaacaagcttctcaagatgcac
cgccagatggcggacatgatgaagatgatgggcggcaagaagggcggcatgatgaagcag
atgatgggcgggcttgccggcaagatgggcctcggcggccttggcggcggcatgccggac
ctgtcgaagatggaccccaagcagctcgaggcgctggccaagcaggccgaggccgccggc
atcaagccgggcagcatgccgggtctgggcggcggcggactaccgggtctcggcggcggt
cgccttcccggccttggcggccttccgggcctgcccggcctgccgaagaagaagtga
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