Schizosaccharomyces osmophilus (fission yeast): SOMG_04898
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Entry
SOMG_04898 CDS
T09274
Symbol
hnt3
Name
(RefSeq) aprataxin Hnt3
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SOMG_04898 (hnt3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04898 (hnt3)
Enzymes [BR:
som01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
SOMG_04898 (hnt3)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
SOMG_04898 (hnt3)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
SOMG_04898 (hnt3)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
SOMG_04898 (hnt3)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
SOMG_04898 (hnt3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
HIT
zf-C2HE
TMEM71
Motif
Other DBs
NCBI-GeneID:
80878363
NCBI-ProteinID:
XP_056039148
UniProt:
A0AAE9WFF9
LinkDB
All DBs
Position
3:complement(join(1920478..1921178,1921385..1921406))
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AA seq
240 aa
AA seq
DB search
MSNSADAFKLLMETQNKSTPLVKRKPQRLSFRDNLRAYIEHPQAHNNVLYYDEDFVFIRD
KYPKSKMHLLLMPRDPSVTLVHPLEILGKHRPLVDKLNFMVFQKLPDLIMKEARNSLFPD
SDLSSRVPSKSLWDFIKLGFHAGPSMNNLHLHVMTRDHVSPSIKHNAHYISFNSPFFVNI
DTPVSQLPVRGSLSYLFQQDVCCYRCDESFGRQFSKLKGHLSEELESWLQETLEREALHT
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaattctgctgacgcatttaaactcttaatggagactcaaaacaaaagcactcct
cttgtaaaaaggaagcctcaacgactctcttttcgagataacttgcgagcgtacattgaa
catcctcaggcccacaacaatgtgttatattacgatgaagattttgtctttatcagggac
aagtatccaaaatcaaaaatgcatttgctgttgatgccacgggatccctcggtaacgttg
gttcaccctttggaaatcctaggaaagcacaggccattagtagacaagttgaattttatg
gtgtttcaaaaacttccggatttaataatgaaagaggctagaaacagtctttttccggat
tctgatttatcctcaagggtcccttcaaaatcgctttgggatttcatcaaattaggattc
catgcaggaccgtccatgaataatcttcatttgcatgttatgacccgggatcacgtgtct
ccaagtattaaacataatgctcattacatttcatttaactctccattttttgttaacatt
gacactcctgtctctcagcttccggttcggggatcgctttcctacttattccaacaagat
gtatgttgttatcgttgtgatgaatcttttggaaggcaattttccaagctaaaaggccat
ctatcagaggagttggaatcatggttacaggaaactttggaacgtgaagcattacatact
tga
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