Sphingobacterium oryzagri: PQ465_17105
Help
Entry
PQ465_17105 CDS
T10198
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQ465_17105 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sop03021
]
PQ465_17105 (rpoB)
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_17105 (rpoB)
Enzymes [BR:
sop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQ465_17105 (rpoB)
Transcription machinery [BR:
sop03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQ465_17105 (rpoB)
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQ465_17105 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WDF68007
UniProt:
A0ABY7WHJ0
LinkDB
All DBs
Position
complement(4176154..4179963)
Genome browser
AA seq
1269 aa
AA seq
DB search
MANNNIQNERVNFATSKKVIDYPDFLDVQLQSFKEFFQLETTSDNRHQEGLFKVFAENFP
ISDSRNIFVLEFLDYFIDPPRYDIQECIERGLTYSVPLKAKLKLSCNDEEHEDFETIVQD
VYLGTIPYMTPKGTFVVNGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWI
EFATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFDLADEVKVSKSGLKKYVGR
RLAARVLKKWIEDFVDEDTGEVVSIDRNEIILERETVLEEDHIDLIIDAGVKSIILAKED
ASNNADYSIIYNTLQKDTSNSEKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDL
GDVGRYRINRKLKLGTADDIKVLTREDIIAIVKYLINLINSKAEVDDIDHLSNRRVRTVG
EQLYAQFGVGLSRMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQ
TNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLAV
HAKINNLGFIETPYRKVAEGKVVVDQPVVYLSAEDEDDKTIAQANAQYDDQGNFLDPKVK
ARYEGDFPIIEPERLDYMDVAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRP
SAPIVGTGLEARVASDSRTLINAEGNGVVEYVDANEIKIRYERTEDDRLVSFDDDVKTYR
LTKFKKTNQNTCINLKPIVIKGQKVSKGEVLCEGYATENGELALGRNLKVAFMPWQGYNF
EDAIVISERVVSQDLFTSLHIEEFELEVRDTKRGEEELTADIPNVSEEATKDLDENGIIR
IGAEVNGGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVVIDTK
LFSRAKKMSKEVERKALEKLEVAHDRAAKLLKERLVDKLFTVVNGKTSQGVYNVYKELLV
PKGAKFTQKILTDLDYTHINPTGWTTDDDKNELIKLSLHFYNIKINEELGAFKREKFAIS
VGDELPSGIVQMAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLADGTPVDIV
LNPLGVPSRMNLGQIYETVLGWAGQKLGMKFATPIFDGAEMGQVEEWITKAELPASGRTY
LYNGLTGDRFDQPTTVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAFGASNILQEILTVKSDDVVGRAKTYEAIVKGNNLPTPSVPESFNVLVHELR
GLGLDITLD
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaacaataatattcaaaacgaaagagtgaattttgctacaagtaagaaggtaatt
gattacccggatttcttggacgtgcaattgcaatctttcaaggagttttttcaattagaa
actacttctgacaatcgccatcaggaagggctgttcaaggttttcgcagaaaacttccct
atttctgattcaagaaacatctttgtgcttgagtttttggattactttatcgatccgcct
cgctacgacattcaagaatgtattgagcgtggtttaacttatagcgttcctcttaaggca
aaattgaagttatcttgtaatgatgaagagcacgaagacttcgaaaccattgtacaggat
gtatatttgggaacaattccttacatgactccaaaaggtacctttgtggtaaacggcgca
gagcgtgtaatcgtttctcaattgcaccgttcccctggtgtattcttcggtcagagtaga
cacacaaatggtactaaactttattctgcaagggtaattccttttaaaggatcttggatc
gagtttgcaacagacgtgaacaacgtcatgtatgcatacatcgaccgtaaaaagaaattc
ccagttactactttgttacgtgcgatcggttacgattcggataaagatatccttgaattg
tttgatctggcagatgaggttaaagttagtaagtctggtcttaagaaatatgttggccgt
cgtttggctgccagggtattgaaaaaatggatcgaagatttcgtggatgaggatactggt
gaggtggtttctatcgatcgtaacgagataattttagaacgtgaaacagttttagaggaa
gaccatattgacttgatcatcgacgcaggtgttaaatctattatccttgcgaaagaagat
gcatcaaacaatgcggattactccattatatataatacattacaaaaagatacttcaaac
tctgaaaaagaggctgtggagcatatctaccgtcagttgcgtaacgcagaaccacctgat
gaggagacagctcgtggtatcattgatcgtttgttcttctcagacaaacgttatgatttg
ggtgatgttggtcgttaccgcatcaaccgtaagttgaaattgggtacagcggatgatatc
aaagtgttaacacgcgaagatattattgccatcgtgaagtacttgattaacctgatcaat
tcaaaagctgaggtggatgatattgaccacttgtctaaccgtcgtgtacgtacggtaggt
gagcaattgtatgcacaatttggcgttggtctttctcgtatggcgcgtaccatccgggag
cgtatgaacattcgtgacaacgaggtgttcacaccgactgacttgatcaatgcgcgtact
ttatcatccgtgatcaactcgttcttcggaacaaaccagttgtctcaatttatggatcaa
accaatccattggcagaaattacgcacaagcgtcgtttatcagccttaggacctggtggt
ctttcccgtgagcgtgctggttttgaggtacgtgacgttcactacacacactacggtcgt
ttatgtacgattgaaacaccagagggaccaaacattggtttgatttcttctttggccgtt
cacgcgaagatcaataacttaggttttatcgaaacgccttaccgtaaggtggctgaaggt
aaagtggttgttgatcagcctgttgtttatttatctgcagaagatgaagatgataaaaca
atcgcacaggcaaacgcgcaatacgatgatcaaggtaacttcctggatccgaaagtaaaa
gcaagatatgagggtgacttcccgattatcgaaccagagcgtttggactatatggacgtt
gcgcctaaccagattacatcaatcgctgcatcgttgattccgttcttggagcatgatgat
gccaaccgtgcattgatgggatcgaacatgcagcgtcaagctgtgccgttgttgcgccct
agcgcgccaatcgttggtacaggcttggaggctcgcgtagcatctgattcgcgtacactt
atcaatgcggaaggcaatggtgtagtagagtatgtcgatgcaaacgaaattaaaatccgt
tacgagcgtaccgaagacgaccgtttggtttcttttgacgacgacgtaaaaacatacaga
ttaacgaaattcaagaaaaccaaccagaatacctgtatcaacttgaagcctattgttatc
aaaggacaaaaggtaagtaaaggtgaggtattgtgtgagggttacgcaaccgaaaatggc
gagttagcgcttggccgtaacttaaaagtggcattcatgccttggcagggttacaacttt
gaggatgcgattgtgatttcagagcgtgtcgtatcgcaagatttgtttacttcgcttcat
attgaagagtttgaactagaagtgcgtgatacgaaacgtggtgaagaagagttgaccgct
gatatcccgaacgtgtcggaagaagctacaaaagacttagacgagaacggtattatccgc
atcggtgctgaggttaacggtggcgatatcttgatcggtaagattacgcctaaaggcgag
tctgatccttcaccagaagagaaattgttacgtgcaatctttggtgataaagccggcgat
gtaaaagatgcttcattaaaagcgtcaccatcattgaaaggtgttgttatcgatacgaag
ctattctctcgtgctaagaaaatgtctaaagaagtcgaaagaaaagctttagaaaaattg
gaagtagcacatgatagagccgctaaacttttaaaagagcgtttggttgataagttattt
accgttgtcaatggtaaaactagccaaggtgtttacaatgtttacaaggagttgttggta
ccaaaaggtgctaagtttacgcagaaaatcctgacagacttagattacacccatatcaat
ccaacaggttggacgacagatgacgataaaaacgaattgatcaaattgtcgttgcacttc
tacaacatcaagatcaacgaagagctaggtgcattcaaacgcgagaaatttgctatttcc
gtgggtgatgagcttccttctggtatcgttcagatggcgaaggtttacgtagctaaaaaa
cgtaaactgaaagtaggtgataagatggcgggtcgccacggtaacaaaggtatcgttgca
cgtatcgtacgtgacgaagatatgcctttcttggctgatggaacgccggttgatatcgtg
ttaaacccacttggtgtaccttcgcgtatgaaccttggacagatttacgaaactgtttta
ggttgggccggacagaaactagggatgaagtttgctacaccaatcttcgatggtgctgaa
atgggccaggtagaagagtggattacgaaagcagaattgccagcttctggtagaacatat
ttatacaacggtttgactggtgatcgttttgatcaaccaacaactgtaggtgtgatctac
atgcttaaacttggtcacatggtagatgataaaatgcacgcgcgttctatcggaccatac
tccttgattacgcaacagccattaggtggtaaggcgcaattcggtggtcagcgttttggt
gagatggaggtttgggcattagaggcatttggtgcatcgaatatcctgcaagagatcttg
accgtgaaatccgatgatgtggttggtcgtgcaaaaacctacgaggcaatcgttaaaggt
aataacctaccaacaccatctgtaccagaatcgttcaacgtattggtacacgagttacgt
ggtttaggtttagatatcacattagattaa
DBGET
integrated database retrieval system
