Spirosoma oryzicola: LQ777_23315
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Entry
LQ777_23315 CDS
T08981
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
soq
Spirosoma oryzicola
Pathway
soq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
soq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LQ777_23315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
soq03021
]
LQ777_23315 (rpoC)
03400 DNA repair and recombination proteins [BR:
soq03400
]
LQ777_23315 (rpoC)
Enzymes [BR:
soq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LQ777_23315 (rpoC)
Transcription machinery [BR:
soq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LQ777_23315 (rpoC)
DNA repair and recombination proteins [BR:
soq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LQ777_23315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UHG91149
LinkDB
All DBs
Position
complement(5519346..5523695)
Genome browser
AA seq
1449 aa
AA seq
DB search
MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSTNQHLDD
KDPNKFIAKMGAEALEMLLSRVDLDELSYSLRHSAATDTSQQRKAEALKRLKVVEAFREA
NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAILEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKNTPEYPIA
GEGMTFYGAEEVIIAINEGKVSKHANIKCRVKVRDENGELVYKVLDTVAGRLLFNQAVPE
EVGYINELLTKKKLQQIIAFIFKISGGARTAQFLDEIKELGFQMAFRGGLSIGLSDVMIP
EAKQGLVEEAKAEVQGVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQLEADQGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDCGTLRGLQVSALKDNEDI
VEPLSERILGRTTVHDIYDPLSKELIVGAGELVTEDVAARIDETSIETVEIRSVLTCESR
QGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNIAVDASIK
AKFDGLIEFEEMRTVESEDAEGNAQTVVMGRSGEVRIVNPEDRNQVLISNNVPYGAFLRV
KDGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYREEFDEQTGFQEKVIIESR
DKAKNPAIVVSGTSTLLLHLDETGNGQLQKGYNLPVGSRLVVKEGQSIKAGQPLAKIPRN
VGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGTIKRGNREIFIESKDGTKKKY
LVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKGPTAVQEYLVNEIQEVYRLQGVKI
NDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAFREENDKVLDAKVVMDAGDSTNFK
PGQIVTSRQLRDENSSLKRRDLTLVTVRDAMAAVSQPTLMGITQSSLGTDSFISAASFQE
TTKVLSEASIRGKRDMLEGLKENVIVGHLIPAGTGIRRYQNAIVGSKEELESITESREQF
ARSKKRATV
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaaaaagaacaaaaaactcaacagcgactttgccagcgtaacaatcagcttg
gcatcgccagagtctattttggagagttcctacggcgaggtgacacagccggagacgatc
aattaccgtacttacaaacccgaaatgggcggcttgttctgcgagcgtattttcgggcca
gttaaggactgggaatgtcactgcggtaaatacaaacggattcgctataaaggcattatc
tgtgaccgctgtggtgtggaagtaactgagaaaaaggttcgccgggagcgtatggggcac
atcgaactggttgttcctgttgcgcatatctggtatttccgcagcttgcctaataaaatt
ggttacctgttaggtctttcgaccaaaaaacttgatcaggttatctactacgaacggtat
gtagtcgttcagcctggcgttaaagctgaagacggtatcaaccagctcgacttcctgacc
gaagacgagtatctggatatcatcgataaactgccgagcacaaaccagcacctcgacgac
aaagacccgaacaaattcatcgctaagatgggggcggaagcgttagaaatgctgttgtcg
cgcgtagaccttgacgaactgtcgtattcactgcgtcactcggcggcaaccgatacatcg
caacagcgtaaagcagaagcgttgaagcggttgaaagtggtagaagcgttccgggaggca
aatggccgtatcgaaaaccgtcctgagtggatggttatcaaaatggtgccggttattcca
cccgaacttcgtccgcttgtccctctggacggtggccgattcgcaacgtctgacctgaat
gatctataccgtcgggtaatcattcggaacaaccgtctgaagcgtctgatcgagatcaaa
gcaccggaagtaattctacggaatgaaaaacggatgttgcaggaagcggtcgattcgctg
ttcgataactcacggaaagtaaacgctgttcgctcggaaggtaaccgcgccctgaaatcg
ctgtctgacatgctaaagggtaagcaaggccgtttccgtcagaacctgcttggtaaacgg
gttgactactctggtcgttcggttatcgtcgttggtcctgaattgaaactgcacgaatgc
ggtctgccaaaagacatggcggctgagctattcaagccgttcgttatccggaagctaatt
gagcggggtatcgttaaaacggttaaatcagcgaagaaaatcgttgaccggaaagatcct
gttatctgggacattctggaaaacgtattgaaaggacaccctgtactgctgaaccgggct
ccaacgctgcaccgtttaggtattcaggcgttccagccaaagctgattgaaggtaaagct
atccagttgcacccactcgtttgtacagcgttcaacgctgactttgacggtgaccagatg
gctgtgcacgtaccacttggtcaggaagctattctcgaagcatctttattgatgctggcg
tcgcataacatcctgaaccccgccaacggagcaccaatcactgtaccatcgcaagacatg
gtacttggcttgtattacgtaacgaagggccgtaagaacacgccagaatacccgattgcg
ggtgaaggtatgacgttctacggcgctgaggaagtaatcatcgctatcaacgaaggtaaa
gtttcgaaacatgccaacatcaaatgccgtgtgaaagtacgggatgagaatggtgagctt
gtttacaaagtacttgatacggttgctggccggttgttgtttaaccaagcggtgccggaa
gaagtaggatacatcaatgaactgctgacgaagaaaaagctgcaacagatcattgcgttt
atcttcaagatctcgggcggtgcgcggacagctcaattcctcgacgaaatcaaggaactt
ggtttccaaatggcgtttagaggtggtctgtcaattggtttgagcgatgtcatgattcct
gaagcaaaacagggactcgttgaagaagcaaaagcggaagtgcagggcgtttgggataac
tacctgatgggtctgatcacggagaacgaacggtacaaccaggttattgatatctggacc
cgtgtgaactctcgtctgaccgagacgctgatgaagcagcttgaagctgatcagggtggt
ttcaactcaatctacatgatgatgcactcgggagcccgtggttctcgcgagcaaattcgt
cagttgggtggtatgcggggtctgatggctaagccacagaaaaacctgcaaggctcagtc
ggtgagatcattgaaaacccaattctgtcgaactttaaagaaggtctcgacgtcttggag
tactttatctcaacgcacggcgcacggaaaggtctggctgatacggctctgaaaacggcc
gatgctggttacctgactcgtcgtctgcacgacgtagcacaagacgttattatcagtgaa
gatgattgcggtacactccgtggtctgcaagtatcggcgctgaaagacaacgaagatatc
gttgagccactgtctgaacgtattctgggtcgtactacggttcacgatatatatgatccg
ctttcgaaagaactgatcgttggcgctggcgaactggttacggaagatgtagcggctcgg
attgacgaaaccagcatcgaaacggttgaaatccgttcggtactgacctgcgaatctcgt
cagggcgtttgtgcgaaatgctacggtcgtaacctggcatcgggccggatggtagacatt
ggtgaagctgtaggtgtaattgcctctcagtcaatcggtgagccaggtacgcagttgaca
cttcgtacgttccacgtcggtggtacggcgtcgaacattgcggttgatgcgtcgatcaaa
gcgaaattcgatggtctgatcgagtttgaagaaatgcgtacggttgaatcggaagatgca
gaaggaaacgcacaaacggtcgttatgggtcgttcgggcgaagtacggatcgtgaatcca
gaagaccggaaccaggttctgatcagcaacaacgtgccatacggtgctttccttcgcgtg
aaagatggcgatatggttaagaaaggtgatgatatttgcgcatgggatccctataacgcc
gttatcctctctgaattaaccggtacgctgaattttgatgcgattgaagatggtattacc
tatcgtgaggagtttgacgaacagactggcttccaggagaaagtgatcatcgaaagccgc
gataaggctaagaaccctgccatcgttgtaagtggtaccagtacgctgctactacacctt
gatgaaaccggaaacggtcaacttcaaaaaggctacaacctgccagttggttcacgtctg
gtcgttaaagaaggacaatcgattaaagcaggtcaaccgctggcgaagattccacgtaac
gttggtaaaacacgcgatattacgggtggtctgccacgtgtaacggaattatttgaagcc
cggaacccatcgaacccggctgtcgtgagtgaaattgatggtgtcgttacgtacggtact
atcaagcgtggtaaccgcgagatcttcatcgagtcgaaagacggtacgaagaaaaagtat
ctcgtcccactgtcgaagttcatccttgtccaggataacgactttgtacgggctggtgct
ccactgtcggacggtgctattacaccaagcgacattctggcgattaaagggccaacggct
gttcaggaatacctggtaaacgaaattcaggaagtttaccgtctgcaaggggtgaaaatc
aacgataaacacatcgaggctatcgtgcgccagatgatgcagaaagttgaaatcatcgat
tcgggcgacaccaacttcctcgaaggtcaagttgttgataagtgggcattccgtgaagag
aacgacaaagttctcgacgctaaagtggttatggatgctggtgattcaacgaacttcaag
cctggccagattgtaacaagccgtcagttacgcgatgagaactcaagtttgaaacgccgt
gacctgacactggtaaccgtccgtgatgcaatggctgccgtttcgcaaccaacgctgatg
ggtattacacagtcgtcgcttggtacagacagcttcatttcggcggcttccttccaggaa
acaaccaaagtgttgagtgaagcgtctatccgtggtaagcgtgacatgctcgaaggattg
aaagaaaacgttatcgtcggtcacctgatccctgctggaacgggtatccgtcgctaccaa
aacgcaatcgtcggttcgaaagaagaacttgagtcaatcaccgaatcacgggagcagttt
gctcgtagcaaaaagcgggcaacggtatag
DBGET
integrated database retrieval system
