Sorangium sp. So ce836: NQZ70_00666
Help
Entry
NQZ70_00666 CDS
T11263
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sorg Sorangium sp. So ce836
Pathway
sorg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQZ70_00666 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sorg03021
]
NQZ70_00666 (rpoB)
03400 DNA repair and recombination proteins [BR:
sorg03400
]
NQZ70_00666 (rpoB)
Enzymes [BR:
sorg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQZ70_00666 (rpoB)
Transcription machinery [BR:
sorg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQZ70_00666 (rpoB)
DNA repair and recombination proteins [BR:
sorg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQZ70_00666 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Permuted_GreAB-C
Motif
Other DBs
NCBI-ProteinID:
WCQ87995
LinkDB
All DBs
Position
864995..869131
Genome browser
AA seq
1378 aa
AA seq
DB search
MPSVVQSNFRVRKNLGRVRRIIDVPNLIDIQKSSYDKFLQMTVPPNEREEVGLQAVFRSV
FPIKDFNGTSELVFVSYNLEPPKYDVDECRQRGMTYSAPIKVTNQLMIYDTRDGGERIVR
DIKEQEVYFGELPLMTETGTFIINGTERVVVSQLHRSPGVFFDHDKGKTHSSGKLLYSAR
VIPYRGSWLDFEFDPKDIIYVRIDRRRKMHATVLLRALGYSTQDLLNYFYSTETVYLEKG
GKYSKSIEYDLLAGQRTTRDIKIGNDVIVKKNTKFTRAAIRKMKEAKLERLSLEPEELVG
KVAAHDIVDPETGEVVVEVNEELTEAKLERLRDANIEQFRILFIDGLNVGSYLRDTLLTD
KVKTMEDSILEIYRRLRPGDPPTLETAKTLFHNLFFNAERYDLSKVGRLKLNYKFYRDVP
EDERPGLDLTVLTPQDILETVRHLIELKNGRGSVDDIDHLGNRRVRAVGELMENQYRIGL
VRMERAIKERMSMSQEIDTLMPHDLINAKPVSAVVKEYFGSSQLSQFMDQTNPLSEVTHK
RRLSALGPGGLTRERAGFEVRDVHATHYGRICPIETPEGPNIGLIASLSTFARVNEFGFV
ETPYRKVENGRVTEDVIWLSALEEEGKYIAQATVNLDESGRFKESLVSARYNGEFKIVTP
EMVELMDVAPNQMVSVAAALVPFLEHDDANRALMGANMQRQAVPLVQSHAPLVGTGMEER
LARDSGVCVIARRPGVVESVDATRIVVRAEGEGAEVPDIYHLMKFQRSNQSTCYTQKPVV
RTGEVVKKGDVLADGPSTDMGELALGQNVLVAFMPWQGYNFEDSILVSERIAKDDVFTSI
HIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDDSGIVRIGAEVRPGDILVGKITPKG
ETQLSPEEKLLRAIFGEKAGDVRDSSLKVPPGVGGIVINARVFSRKGTEKDDRARDIEDQ
ERARIERTRDEEIKILRDSFFRRIRELLLGKETTGKLVDDKGKVLFQKGAIIDEASLAEI
PRKYWGEIPVDDAERVQQILRDLEELVRTREEHFRDKIDRLSKGDELPPGVIKMVKVYIA
IKRKLQVGDKMAGRHGNKGVISRILPEEDMPYLQDGRPVDLVLNPLGVPSRMNVGQILEI
HLGWGAFELGNQLQRMLEQQRSAADIKEHLKAIYAGDESMSGFFDDLEDGDVKRFVKTVD
EGVFMGSPVFDGAHESDIKGALELAGLPPSGQAILFDGRTGEAFDQNVTVGIMYMLKLHH
LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDD
VMGRTRMYEAIVKGDYTLEAGLPESFNVLIKELQSLCLNVELVETSGGVEASAAEEEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggtcgtccaatccaacttccgcgtccgtaagaacctgggtcgcgttcgtcgc
atcatcgacgtccccaacctgatcgacatccagaagtcgagctacgacaagttcctccag
atgaccgttccgccgaacgagcgggaggaggtcgggcttcaggcggtgttccgctcggtc
ttcccgatcaaagacttcaacggcacgagcgagctcgtcttcgtctcgtacaacctcgag
ccgccgaagtacgacgtcgacgagtgtcgccagcgcggcatgacctactcggccccgatc
aaggtcacgaaccagctgatgatctacgacacccgcgacggcggggagcggatcgtgcgc
gacatcaaggagcaggaggtctacttcggcgagctcccgctgatgaccgagacgggcacg
ttcatcatcaacgggaccgagcgcgtcgtcgtcagccagctgcaccgcagccccggcgtc
ttcttcgaccacgacaagggcaagacgcactcgagcggcaagctgctctactccgcgcgc
gtcatcccctaccgcggctcgtggctcgacttcgagttcgacccgaaggacatcatctac
gtgcgcatcgatcggcggcggaagatgcacgcgaccgtgctgctgcgcgcgctcgggtac
tcgacgcaggacctgctcaactacttctattcgaccgagaccgtgtacctggagaagggg
ggcaagtactcgaagagcatcgagtacgatctcctggccggccagcggacgacgcgcgac
atcaagatcggcaacgacgtcatcgtcaagaagaacacgaagttcacccgcgccgccatc
cggaagatgaaggaggcgaagctcgagcggctcagcctcgagccggaggagctcgtcggg
aaggtcgcggcgcacgacatcgtcgacccggagacgggcgaggtcgtggtcgaggtcaac
gaggagctcaccgaggcgaagctcgagcggctgcgcgacgcgaacatcgagcagttccgc
atcctcttcatcgacggcctgaacgtgggctcgtacctccgcgacacgctcctcaccgac
aaggtgaagacgatggaggactcgatcctcgagatctaccgccggctgcggccgggcgat
ccgccgacgctcgagaccgcgaagaccctgttccacaacctgttcttcaacgccgagcgc
tacgacctgtcgaaggtcggccggctgaagctgaactacaagttctaccgggacgtcccc
gaggacgagcggccggggctcgacctcaccgtgctcacgccgcaggacatcctcgagacg
gtgcgccacctgatcgagctgaagaacgggcgcggctcggtcgacgacatcgaccacctc
ggcaaccgccgcgtccgcgcggtcggcgagctgatggagaatcagtatcgcatcggcctc
gtccgcatggagcgcgcgatcaaggagcgcatgagcatgtcgcaggagatcgacacgctc
atgccccacgacctgatcaacgcgaagccggtcagcgcggtcgtgaaggagtacttcggg
agctcgcagctctcgcagttcatggaccagaccaacccgctctccgaggtcacccacaag
cgccgcctgtcggcgctcgggccgggcggcctcacccgtgagcgggccgggttcgaggtg
cgcgacgtccacgcgacccactacgggcgcatctgcccgatcgagacgccggaagggccg
aacatcggcctcatcgcgtcgctgtcgacgttcgcccgcgtgaacgagttcggcttcgtc
gagacgccgtaccgcaaggtcgagaacggccgcgtgaccgaggacgtgatctggctctcc
gcgctcgaggaagagggcaagtacatcgcgcaggcgaccgtgaacctcgacgagagcggg
cgcttcaaggagtcgctcgtctcggcccgttacaacggcgagttcaagatcgtcacgccc
gagatggtggagctcatggacgtcgcgccgaaccagatggtgtcggtcgccgccgcgctc
gtgcccttcctcgagcacgacgacgcgaaccgcgcgctcatgggcgccaacatgcagcgc
caggccgtgccgctcgtccagtcgcacgcgccgctcgtgggcaccggcatggaggagcgg
ctcgcccgcgactccggcgtctgcgtgatcgcgcggcgccccggcgtcgtcgagagcgtc
gacgcgacgcgcatcgtcgtccgggccgagggcgagggcgccgaggtgcccgacatctac
cacctcatgaagttccagcgctcgaaccagtcgacctgctacacgcagaagccggtcgtc
cggacgggtgaggtggtgaagaagggcgacgtgctcgccgacggcccgtcgacggacatg
ggcgagctcgcgctcggccagaacgtgctcgtcgcgttcatgccgtggcagggctacaac
ttcgaggactccatcctcgtgtccgagcgcatcgccaaggacgacgtgttcacctcgatc
cacatcgaggagttcgagtgcgtcgcccgcgacacgaagctcggcaaggaggagatcacc
cgcgacatcccgaacgtcggcgaggaggcgctcaaggacctcgacgactccggcatcgtc
cgcatcggggccgaggtgcgcccgggcgacatcctggtcggcaagatcaccccgaagggt
gagacccagctctcgcccgaggagaagctgctccgggcgatcttcggcgagaaggccggc
gacgtgcgcgacagctcgctcaaggtgccgcccggcgtcggcgggatcgtcatcaacgcc
cgcgtgttctcgcgcaaggggaccgagaaggacgaccgcgcgcgggacatcgaggaccag
gagcgggcccggatcgagcggacgcgcgacgaggagatcaagatcctccgcgactcgttc
ttccgccgcatccgcgagctcctcctcggcaaggagacgacgggcaagctcgtcgacgac
aagggcaaggtgctcttccagaagggcgccatcatcgacgaggcctcgctcgccgagatc
ccccgcaagtactggggcgagatcccggtcgacgacgccgagcgggtccagcagatcctg
cgggatctcgaggagctcgtccgcacgcgcgaggagcacttccgggacaagatcgatcgc
ctgtccaagggcgacgagctgccgccgggcgtcatcaagatggtgaaggtctatatcgcc
atcaagcgcaagctccaggtcggcgacaagatggcgggccgccacggcaacaagggcgtc
atcagccgcatcctccccgaggaggacatgccgtatctgcaggacggcaggccggtcgat
ctcgtgctcaacccgctcggcgtgccgagccgcatgaacgtcggtcagatcctcgagatc
cacctcgggtggggcgccttcgagctcggcaaccagctgcagcggatgctcgagcagcag
cggtcggccgccgacatcaaggagcacctcaaggccatctacgcgggcgacgagtcgatg
agcggcttcttcgacgacctcgaggacggcgacgtcaagcgcttcgtcaagacggtcgac
gagggcgtcttcatgggctctccggtgttcgacggcgcgcacgagtcggacatcaagggc
gccctcgagctcgcgggtctcccgccctcgggccaggcgatcctcttcgacgggcgcacg
ggcgaggcgttcgatcagaacgtcacggtgggcatcatgtacatgctgaagctccaccac
ctcgtcgacgacaagatccacgcgcgctcgatcgggccctactcgctcgtcacgcagcag
cccctcggcggcaaggcgcagttcggcgggcagcggctcggcgagatggaggtctgggcg
atggaggcctacggcgcggcctacgcgctgcaggagttcctcaccgtgaagagcgacgac
gtgatgggccgcacccggatgtacgaggccatcgtgaagggggattacaccctggaggcg
gggctgccggagagcttcaacgtgctcatcaaggagctccagtcgctgtgcctgaacgtc
gagctggtcgagacgagcgggggcgtggaggcctcggccgcggaggaagaggagtga
DBGET
integrated database retrieval system
